Wall clock time and date at job start Mon Mar 30 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35038 * 126.39857 * 2 1 4 4 N 1.30503 * 108.69931 * 179.76493 * 3 2 1 5 5 C 1.34129 * 109.25389 * 0.38190 * 4 3 2 6 6 C 1.50700 * 125.98794 * 179.87785 * 5 4 3 7 7 H 1.09004 * 109.47210 * 24.69572 * 6 5 4 8 8 C 1.50702 * 109.46869 * 144.69279 * 6 5 4 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 6 5 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 6 5 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 6 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 6 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 C 1.53000 * 109.47313 * 264.69390 * 6 5 4 17 17 N 1.46897 * 109.47275 * 65.00232 * 16 6 5 18 18 C 1.34668 * 108.02075 * 359.62380 * 5 4 3 19 19 H 1.08995 * 109.47086 * 269.99845 * 1 2 3 20 20 H 1.08999 * 109.46971 * 29.99996 * 1 2 3 21 21 H 1.08997 * 109.47309 * 149.99778 * 1 2 3 22 22 H 1.08002 * 125.65446 * 0.02562 * 3 2 1 23 23 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 24 24 H 1.09005 * 109.46994 * 184.99839 * 16 6 5 25 25 H 1.08996 * 109.47227 * 304.99695 * 16 6 5 26 26 H 1.00897 * 111.00073 * 180.02562 * 17 16 6 27 27 H 1.00902 * 111.00123 * 303.95332 * 17 16 6 28 28 H 1.08005 * 126.59191 * 180.25093 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 0.0051 5 6 3.5460 -0.6506 0.0000 6 6 4.7890 -1.5027 0.0007 7 1 5.6152 -0.9397 0.4349 8 6 4.5450 -2.7462 0.8163 9 1 3.5857 -2.9040 1.2868 10 6 5.5445 -3.6857 0.9568 11 7 6.7125 -3.4938 0.3837 12 14 5.2395 -5.2306 1.9615 13 1 4.1119 -5.9928 1.3675 14 1 6.4628 -6.0727 1.9582 15 1 4.9017 -4.8546 3.3578 16 6 5.1388 -1.8956 -1.4360 17 7 5.4932 -0.6922 -2.2003 18 6 2.2772 -1.1018 -0.0001 19 1 -0.3633 0.0000 1.0276 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3634 -0.8899 -0.5138 22 1 1.9336 2.1144 0.0004 23 1 7.4158 -4.1545 0.4828 24 1 5.9844 -2.5835 -1.4289 25 1 4.2798 -2.3806 -1.8995 26 1 5.7281 -0.9253 -3.1534 27 1 4.7494 -0.0111 -2.1678 28 1 1.9611 -2.1346 0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260448558.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:59 Heat of formation + Delta-G solvation = 60.063504 kcal Electronic energy + Delta-G solvation = -12267.584571 eV Core-core repulsion = 10126.610859 eV Total energy + Delta-G solvation = -2140.973712 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.27348 -35.24361 -33.13011 -32.01748 -29.69799 -27.48366 -26.01359 -23.74834 -21.30402 -20.46434 -18.74302 -16.43729 -16.12295 -15.15714 -14.67108 -14.25610 -13.67932 -13.54093 -12.96923 -12.59783 -12.50084 -12.39169 -11.65842 -10.99802 -10.72859 -10.42182 -10.25699 -9.70318 -9.30968 -8.92862 -8.72786 -8.35699 -7.48889 -7.34376 -5.93933 -4.00743 2.78001 3.34025 3.37679 3.39490 3.41147 4.06279 4.46709 4.90518 5.23496 5.24880 5.35050 5.44268 5.64478 5.96346 6.38445 6.62115 6.87571 6.96849 7.12197 7.62777 7.70750 7.86169 8.02977 8.10830 8.37077 8.54236 8.62490 8.96988 9.06826 9.62780 11.11805 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.037546 B = 0.012233 C = 0.009925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.577796 B = 2288.293594 C = 2820.342206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.476 5.476 3 C 0.151 3.849 4 N -0.490 5.490 5 C 0.048 3.952 6 C 0.124 3.876 7 H 0.049 0.951 8 C -0.511 4.511 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.884 5.884 12 Si 0.893 3.107 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.074 3.926 17 N -0.850 5.850 18 C -0.067 4.067 19 H 0.068 0.932 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.192 0.808 23 H 0.262 0.738 24 H 0.106 0.894 25 H -0.009 1.009 26 H 0.315 0.685 27 H 0.326 0.674 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 4.218 -2.452 12.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.163 5.163 3 C -0.130 4.130 4 N -0.209 5.209 5 C -0.080 4.080 6 C 0.104 3.896 7 H 0.067 0.933 8 C -0.550 4.550 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.522 5.522 12 Si 0.721 3.279 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.203 1.203 16 C -0.056 4.056 17 N -0.377 5.377 18 C -0.197 4.197 19 H 0.086 0.914 20 H 0.097 0.903 21 H 0.097 0.903 22 H 0.209 0.791 23 H 0.072 0.928 24 H 0.124 0.876 25 H 0.009 0.991 26 H 0.125 0.875 27 H 0.138 0.862 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.017 4.702 -1.928 11.232 hybrid contribution -1.921 -1.606 -0.005 2.504 sum -11.938 3.096 -1.933 12.483 Atomic orbital electron populations 1.21845 0.78161 1.03669 1.02705 1.45332 1.06670 1.07572 1.56701 1.24827 0.86352 0.93044 1.08793 1.70285 1.18365 1.13044 1.19179 1.21650 0.95658 0.89223 1.01480 1.17202 0.88140 0.91658 0.92611 0.93344 1.21103 0.99070 1.03783 1.31085 0.92519 1.24978 0.95087 0.98223 0.95705 1.69893 1.03421 1.35373 1.43512 0.86649 0.77436 0.83044 0.80777 1.20420 1.21248 1.20330 1.22036 0.99317 0.90657 0.93638 1.58917 1.47460 1.15358 1.15975 1.22559 0.91208 0.91768 1.14139 0.91375 0.90312 0.90334 0.79100 0.92838 0.87604 0.99076 0.87532 0.86238 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 11.18 59.85 0.67 1.49 15 2 N -0.48 -7.80 3.15 -125.99 -0.40 -8.20 15 3 C 0.15 2.62 12.56 -90.38 -1.14 1.49 15 4 N -0.49 -10.88 10.88 -10.87 -0.12 -11.00 15 5 C 0.05 1.14 5.17 -82.85 -0.43 0.71 15 6 C 0.12 3.33 2.44 -92.92 -0.23 3.10 15 7 H 0.05 1.49 8.14 -51.93 -0.42 1.07 15 8 C -0.51 -14.21 8.25 -34.44 -0.28 -14.49 15 9 H 0.06 1.53 6.82 -52.49 -0.36 1.17 15 10 C 0.06 1.72 5.29 -17.82 -0.09 1.63 15 11 N -0.88 -25.62 11.28 55.43 0.63 -24.99 15 12 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 15 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 14 H -0.29 -6.79 7.11 56.52 0.40 -6.38 15 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 16 C 0.07 1.87 6.07 -3.83 -0.02 1.85 15 17 N -0.85 -19.20 9.62 -10.37 -0.10 -19.30 15 18 C -0.07 -1.37 10.45 -16.56 -0.17 -1.55 15 19 H 0.07 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.08 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.19 2.42 8.06 -52.49 -0.42 2.00 15 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 24 H 0.11 2.96 5.94 -51.93 -0.31 2.65 15 25 H -0.01 -0.22 8.14 -51.93 -0.42 -0.65 15 26 H 0.31 6.18 9.08 -39.29 -0.36 5.82 15 27 H 0.33 7.21 7.77 -39.29 -0.31 6.90 15 28 H 0.17 3.30 7.66 -52.48 -0.40 2.90 15 LS Contribution 241.55 15.07 3.64 3.64 Total: -1.00 -32.11 241.55 -6.47 -38.58 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -3.40 Total: 10.80 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.70 Total: -5.77 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.01 Total: -63.48 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.11 -6.47 -38.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448558.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.639 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds