Wall clock time and date at job start Mon Mar 30 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35038 * 126.39857 * 2 1 4 4 N 1.30503 * 108.69931 * 179.76493 * 3 2 1 5 5 C 1.34129 * 109.25389 * 0.38190 * 4 3 2 6 6 C 1.50700 * 125.98794 * 179.87785 * 5 4 3 7 7 H 1.09004 * 109.47210 * 24.69572 * 6 5 4 8 8 C 1.50702 * 109.46869 * 144.69279 * 6 5 4 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 6 5 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 6 5 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 6 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 6 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 C 1.53000 * 109.47313 * 264.69390 * 6 5 4 17 17 N 1.46897 * 109.47275 * 65.00232 * 16 6 5 18 18 C 1.34668 * 108.02075 * 359.62380 * 5 4 3 19 19 H 1.08995 * 109.47086 * 269.99845 * 1 2 3 20 20 H 1.08999 * 109.46971 * 29.99996 * 1 2 3 21 21 H 1.08997 * 109.47309 * 149.99778 * 1 2 3 22 22 H 1.08002 * 125.65446 * 0.02562 * 3 2 1 23 23 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 24 24 H 1.09005 * 109.46994 * 184.99839 * 16 6 5 25 25 H 1.08996 * 109.47227 * 304.99695 * 16 6 5 26 26 H 1.00897 * 111.00073 * 180.02562 * 17 16 6 27 27 H 1.00902 * 111.00123 * 303.95332 * 17 16 6 28 28 H 1.08005 * 126.59191 * 180.25093 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 0.0051 5 6 3.5460 -0.6506 0.0000 6 6 4.7890 -1.5027 0.0007 7 1 5.6152 -0.9397 0.4349 8 6 4.5450 -2.7462 0.8163 9 1 3.5857 -2.9040 1.2868 10 6 5.5445 -3.6857 0.9568 11 7 6.7125 -3.4938 0.3837 12 14 5.2395 -5.2306 1.9615 13 1 4.1119 -5.9928 1.3675 14 1 6.4628 -6.0727 1.9582 15 1 4.9017 -4.8546 3.3578 16 6 5.1388 -1.8956 -1.4360 17 7 5.4932 -0.6922 -2.2003 18 6 2.2772 -1.1018 -0.0001 19 1 -0.3633 0.0000 1.0276 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3634 -0.8899 -0.5138 22 1 1.9336 2.1144 0.0004 23 1 7.4158 -4.1545 0.4828 24 1 5.9844 -2.5835 -1.4289 25 1 4.2798 -2.3806 -1.8995 26 1 5.7281 -0.9253 -3.1534 27 1 4.7494 -0.0111 -2.1678 28 1 1.9611 -2.1346 0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260448558.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:59 Heat of formation + Delta-G solvation = 36.965346 kcal Electronic energy + Delta-G solvation = -12268.586182 eV Core-core repulsion = 10126.610859 eV Total energy + Delta-G solvation = -2141.975323 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.73898 -37.14127 -34.56570 -34.02674 -31.51542 -28.99064 -27.37990 -25.79383 -23.12950 -21.86351 -20.45652 -18.26932 -17.73910 -16.73320 -16.42752 -15.99779 -15.48131 -14.88123 -14.62725 -14.34134 -13.84740 -13.50544 -13.30382 -12.94232 -12.62233 -12.38115 -12.25880 -11.64031 -11.21146 -10.63958 -10.43463 -10.22263 -9.31841 -9.00640 -8.05647 -6.20988 1.34883 1.44629 1.47152 1.54798 2.17710 2.40904 2.50763 3.20814 3.96763 4.09360 4.14874 4.25667 4.52035 4.65676 4.75143 4.89726 5.06089 5.08357 5.48090 5.60102 5.79744 5.91248 6.14989 6.30732 6.53047 6.68307 6.80146 6.94719 7.45573 7.48386 8.99735 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.037546 B = 0.012233 C = 0.009925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.577796 B = 2288.293594 C = 2820.342206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.467 5.467 3 C 0.171 3.829 4 N -0.539 5.539 5 C 0.008 3.992 6 C 0.129 3.871 7 H -0.010 1.010 8 C -0.527 4.527 9 H 0.060 0.940 10 C 0.011 3.989 11 N -0.916 5.916 12 Si 0.963 3.037 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.275 1.275 16 C 0.088 3.912 17 N -0.850 5.850 18 C -0.065 4.065 19 H 0.084 0.916 20 H 0.113 0.887 21 H 0.089 0.911 22 H 0.242 0.758 23 H 0.262 0.738 24 H 0.077 0.923 25 H -0.007 1.007 26 H 0.333 0.667 27 H 0.332 0.668 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.943 4.509 -2.365 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.151 5.151 3 C -0.111 4.111 4 N -0.259 5.259 5 C -0.120 4.120 6 C 0.109 3.891 7 H 0.008 0.992 8 C -0.566 4.566 9 H 0.079 0.921 10 C -0.188 4.188 11 N -0.555 5.555 12 Si 0.788 3.212 13 H -0.189 1.189 14 H -0.210 1.210 15 H -0.200 1.200 16 C -0.043 4.043 17 N -0.380 5.380 18 C -0.197 4.197 19 H 0.102 0.898 20 H 0.132 0.868 21 H 0.108 0.892 22 H 0.258 0.742 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.011 0.989 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.673 5.000 -1.855 13.750 hybrid contribution -1.177 -1.577 -0.049 1.968 sum -13.850 3.424 -1.904 14.393 Atomic orbital electron populations 1.22295 0.74096 1.06083 1.04528 1.45555 1.08918 1.05847 1.54775 1.25684 0.85095 0.94991 1.05334 1.70155 1.21603 1.12460 1.21658 1.21187 0.95556 0.90085 1.05174 1.16906 0.88174 0.91396 0.92670 0.99174 1.21415 0.99348 1.04391 1.31436 0.92143 1.25837 0.94718 1.01476 0.96745 1.70057 1.04281 1.36433 1.44703 0.85550 0.77668 0.78987 0.79043 1.18929 1.20980 1.20007 1.21689 0.97944 0.90954 0.93710 1.58764 1.47666 1.14471 1.17062 1.22440 0.90856 0.92981 1.13417 0.89777 0.86807 0.89193 0.74204 0.92895 0.90532 0.98867 0.85567 0.85563 0.81095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 11.18 127.77 1.43 2.57 15 2 N -0.47 -13.82 3.15 -552.53 -1.74 -15.57 15 3 C 0.17 5.44 12.56 180.26 2.26 7.71 15 4 N -0.54 -23.73 10.88 -188.32 -2.05 -25.78 15 5 C 0.01 0.37 5.17 41.39 0.21 0.58 15 6 C 0.13 7.20 2.44 -12.29 -0.03 7.17 15 7 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 15 8 C -0.53 -30.04 8.25 25.60 0.21 -29.83 15 9 H 0.06 3.30 6.82 -2.91 -0.02 3.28 15 10 C 0.01 0.63 5.29 84.66 0.45 1.07 15 11 N -0.92 -54.86 11.28 21.45 0.24 -54.62 15 12 Si 0.96 43.97 29.54 68.60 2.03 46.00 15 13 H -0.26 -11.42 7.11 99.48 0.71 -10.71 15 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 15 H -0.27 -12.33 7.11 99.48 0.71 -11.63 15 16 C 0.09 4.62 6.07 86.30 0.52 5.14 15 17 N -0.85 -39.18 9.62 -186.72 -1.80 -40.98 15 18 C -0.06 -2.58 10.45 83.09 0.87 -1.71 15 19 H 0.08 1.16 8.14 -2.39 -0.02 1.14 15 20 H 0.11 1.10 8.14 -2.39 -0.02 1.08 15 21 H 0.09 1.29 8.14 -2.39 -0.02 1.28 15 22 H 0.24 4.89 8.06 -2.91 -0.02 4.86 15 23 H 0.26 14.87 8.31 -92.70 -0.77 14.10 15 24 H 0.08 4.47 5.94 -2.38 -0.01 4.45 15 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 26 H 0.33 13.11 9.08 -89.70 -0.81 12.29 15 27 H 0.33 14.82 7.77 -89.69 -0.70 14.12 15 28 H 0.17 6.56 7.66 -2.91 -0.02 6.54 15 Total: -1.00 -72.82 241.55 2.27 -70.55 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.34 Total: 27.70 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 5.93 Total: -7.31 kcal Atomic # 7 Polarization: -131.60 SS G_CDS: -5.35 Total: -136.94 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -72.82 2.27 -70.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448558.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.513 kcal (2) G-P(sol) polarization free energy of solvation -72.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds