Wall clock time and date at job start Mon Mar 30 2020 02:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35045 * 126.39592 * 2 1 4 4 N 1.30506 * 108.69508 * 180.02562 * 3 2 1 5 5 C 1.34128 * 109.25848 * 359.75709 * 4 3 2 6 6 C 1.34668 * 108.01972 * 0.39787 * 5 4 3 7 7 C 1.50695 * 126.59277 * 179.87518 * 6 5 4 8 8 H 1.08999 * 109.47656 * 204.68745 * 7 6 5 9 9 C 1.50697 * 109.47254 * 84.68423 * 7 6 5 10 10 H 1.07997 * 120.00221 * 354.55705 * 9 7 6 11 11 C 1.37881 * 120.00331 * 174.55519 * 9 7 6 12 12 N 1.31518 * 119.99640 * 351.96582 * 11 9 7 13 13 Si 1.86798 * 120.00258 * 171.97000 * 11 9 7 14 14 H 1.48503 * 109.47117 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47726 * 119.99782 * 13 11 9 16 16 H 1.48507 * 109.46908 * 239.99865 * 13 11 9 17 17 C 1.53000 * 109.46899 * 324.68728 * 7 6 5 18 18 N 1.46896 * 109.47476 * 295.53474 * 17 7 6 19 19 H 1.09004 * 109.47106 * 269.99653 * 1 2 3 20 20 H 1.09002 * 109.47468 * 29.99779 * 1 2 3 21 21 H 1.09001 * 109.47409 * 149.99842 * 1 2 3 22 22 H 1.07994 * 125.65336 * 359.97438 * 3 2 1 23 23 H 1.07998 * 125.98958 * 180.25385 * 5 4 3 24 24 H 0.96998 * 119.99763 * 180.02562 * 12 11 9 25 25 H 1.09003 * 109.47037 * 175.53509 * 17 7 6 26 26 H 1.09005 * 109.47482 * 55.54178 * 17 7 6 27 27 H 1.00899 * 111.00513 * 174.64918 * 18 17 7 28 28 H 1.00902 * 110.99979 * 298.61209 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6902 -0.0006 5 6 3.5460 -0.6505 0.0044 6 6 2.2772 -1.1018 -0.0007 7 6 1.8362 -2.5428 -0.0005 8 1 0.8390 -2.6178 -0.4341 9 6 1.8087 -3.0595 1.4149 10 1 2.1662 -2.4391 2.2233 11 6 1.3269 -4.3244 1.6778 12 7 0.7471 -5.0187 0.7232 13 14 1.4976 -5.0517 3.3899 14 1 2.1822 -4.0763 4.2761 15 1 0.1503 -5.3558 3.9353 16 1 2.2967 -6.3015 3.3193 17 6 2.8164 -3.3761 -0.8285 18 7 2.7646 -2.9426 -2.2311 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3634 -0.8900 -0.5139 22 1 1.9334 2.1144 -0.0004 23 1 4.4368 -1.2612 0.0092 24 1 0.4078 -5.9084 0.9082 25 1 2.5431 -4.4293 -0.7635 26 1 3.8266 -3.2386 -0.4428 27 1 3.4641 -3.4167 -2.7823 28 1 1.8434 -3.0814 -2.6187 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260479123.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:17 Heat of formation + Delta-G solvation = 53.549637 kcal Electronic energy + Delta-G solvation = -12435.358119 eV Core-core repulsion = 10294.101945 eV Total energy + Delta-G solvation = -2141.256174 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.08877 -35.22183 -33.13658 -32.27465 -29.95965 -26.73648 -26.18094 -23.86955 -21.62490 -20.20896 -18.61607 -16.57983 -16.29527 -14.76653 -14.70145 -14.49471 -13.75118 -13.43208 -12.68121 -12.32710 -12.24990 -12.05378 -11.93656 -11.37928 -11.03836 -10.77605 -10.15071 -9.98568 -9.46242 -8.99728 -8.64099 -8.52125 -7.68308 -7.20702 -6.17953 -4.22070 3.10585 3.21417 3.30771 3.37412 3.69259 4.15119 4.36387 5.12051 5.31495 5.44156 5.65476 5.70106 5.86592 5.95008 6.46267 6.55771 6.77926 6.91321 7.09332 7.31747 7.72448 7.78620 7.79141 7.98351 8.16266 8.26519 8.34195 8.82921 9.01269 9.42922 10.88663 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.036082 B = 0.013005 C = 0.011685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.818807 B = 2152.558283 C = 2395.685046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.463 5.463 3 C 0.132 3.868 4 N -0.500 5.500 5 C -0.053 4.053 6 C 0.063 3.937 7 C 0.117 3.883 8 H 0.036 0.964 9 C -0.510 4.510 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.075 3.925 18 N -0.854 5.854 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.189 0.811 23 H 0.155 0.845 24 H 0.262 0.738 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.322 0.678 28 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.673 4.599 -2.453 5.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.147 5.147 3 C -0.148 4.148 4 N -0.219 5.219 5 C -0.198 4.198 6 C -0.052 4.052 7 C 0.097 3.903 8 H 0.054 0.946 9 C -0.549 4.549 10 H 0.078 0.922 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.055 4.055 18 N -0.381 5.381 19 H 0.088 0.912 20 H 0.091 0.909 21 H 0.103 0.897 22 H 0.205 0.795 23 H 0.172 0.828 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.030 5.689 -2.181 6.179 hybrid contribution -0.977 -1.985 0.726 2.329 sum -2.007 3.704 -1.455 4.457 Atomic orbital electron populations 1.21827 0.77873 1.03462 1.03010 1.45160 1.07003 1.07097 1.55487 1.24429 0.86223 0.92901 1.11240 1.70056 1.19433 1.12890 1.19537 1.21623 0.96115 0.89993 1.12096 1.21960 0.90338 0.90589 1.02313 1.17329 0.94893 0.82382 0.95665 0.94561 1.21078 1.42031 0.99908 0.91858 0.92226 1.24968 0.94357 0.97087 0.97283 1.69950 1.38043 1.12072 1.32727 0.86510 0.77857 0.79246 0.84356 1.19562 1.21033 1.20761 1.21877 0.99097 0.98834 0.85711 1.58962 1.08715 1.65625 1.04751 0.91170 0.90863 0.89680 0.79454 0.82794 0.92830 0.93299 0.92985 0.86834 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 11.00 59.84 0.66 1.92 15 2 N -0.46 -9.16 3.15 -121.37 -0.38 -9.54 15 3 C 0.13 2.52 12.56 -90.37 -1.14 1.39 15 4 N -0.50 -11.04 11.25 -14.67 -0.17 -11.21 15 5 C -0.05 -1.21 11.05 -17.81 -0.20 -1.41 15 6 C 0.06 1.44 5.52 -81.60 -0.45 0.99 15 7 C 0.12 2.84 2.06 -92.93 -0.19 2.64 15 8 H 0.04 0.94 7.05 -51.93 -0.37 0.57 15 9 C -0.51 -13.53 8.47 -34.44 -0.29 -13.83 15 10 H 0.06 1.65 7.76 -52.49 -0.41 1.24 15 11 C 0.07 1.72 5.19 -17.82 -0.09 1.63 15 12 N -0.89 -24.02 12.09 55.43 0.67 -23.35 15 13 Si 0.89 20.66 29.54 -169.99 -5.02 15.63 15 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 17 C 0.08 1.70 5.74 -3.83 -0.02 1.68 15 18 N -0.85 -16.51 9.30 -10.37 -0.10 -16.61 15 19 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 20 H 0.07 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.08 1.39 7.12 -51.93 -0.37 1.02 15 22 H 0.19 2.70 8.06 -52.49 -0.42 2.28 15 23 H 0.15 3.45 7.29 -52.49 -0.38 3.07 15 24 H 0.26 6.77 8.31 -40.82 -0.34 6.43 15 25 H 0.05 1.21 6.75 -51.93 -0.35 0.86 15 26 H 0.05 1.18 7.09 -51.93 -0.37 0.81 15 27 H 0.32 5.42 9.08 -39.29 -0.36 5.06 15 28 H 0.33 6.14 9.05 -39.29 -0.36 5.79 15 LS Contribution 242.09 15.07 3.65 3.65 Total: -1.00 -29.91 242.09 -6.43 -36.34 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -3.36 Total: 10.07 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.72 Total: -4.98 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.03 Total: -60.71 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.91 -6.43 -36.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479123.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.893 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds