Wall clock time and date at job start Mon Mar 30 2020 02:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34946 * 126.03644 * 2 1 4 4 C 1.35316 * 107.74870 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.04135 * 180.26489 * 4 3 2 6 6 H 1.08997 * 109.46692 * 19.71109 * 5 4 3 7 7 N 1.46895 * 109.47044 * 139.71515 * 5 4 3 8 8 C 1.52996 * 109.46798 * 259.71312 * 5 4 3 9 9 C 1.50706 * 109.46836 * 174.99897 * 8 5 4 10 10 H 1.07998 * 119.99942 * 0.02562 * 9 8 5 11 11 C 1.37883 * 119.99759 * 179.97438 * 9 8 5 12 12 N 1.31513 * 120.00053 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99427 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47727 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.46476 * 120.00555 * 13 11 9 16 16 H 1.48503 * 109.47087 * 239.99971 * 13 11 9 17 17 C 1.39875 * 107.91722 * 0.02562 * 4 3 2 18 18 N 1.30829 * 108.20298 * 0.02562 * 17 4 3 19 19 H 1.08995 * 109.47195 * 269.94647 * 1 2 3 20 20 H 1.08996 * 109.47070 * 29.94956 * 1 2 3 21 21 H 1.09003 * 109.47068 * 149.95013 * 1 2 3 22 22 H 1.07999 * 126.12479 * 0.04451 * 3 2 1 23 23 H 1.00899 * 111.00155 * 60.00061 * 7 5 4 24 24 H 1.00899 * 110.99831 * 183.95451 * 7 5 4 25 25 H 1.09000 * 109.47606 * 294.99951 * 8 5 4 26 26 H 1.09002 * 109.47610 * 55.00475 * 8 5 4 27 27 H 0.97000 * 119.99879 * 179.97438 * 12 11 9 28 28 H 1.08004 * 125.89555 * 179.97438 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5454 0.0048 6 1 4.4986 2.5415 0.3558 7 7 5.7808 0.9685 0.8988 8 6 5.3340 1.6401 -1.4134 9 6 6.4833 2.6148 -1.4315 10 1 6.7805 3.1161 -0.5223 11 6 7.1560 2.8656 -2.6087 12 7 6.7943 2.2547 -3.7158 13 14 8.5801 4.0742 -2.6312 14 1 8.7854 4.6230 -1.2667 15 1 9.8140 3.3770 -3.0748 16 1 8.2734 5.1831 -3.5702 17 6 3.5347 -0.7321 -0.0015 18 7 2.2892 -1.1327 -0.0021 19 1 -0.3633 -0.0010 1.0276 20 1 -0.3633 0.8904 -0.5130 21 1 -0.3633 -0.8896 -0.5146 22 1 1.9280 2.1193 0.0007 23 1 6.0474 0.0442 0.5944 24 1 6.5863 1.5721 0.9699 25 1 5.6852 0.6583 -1.7308 26 1 4.5548 1.9846 -2.0934 27 1 7.2673 2.4314 -4.5440 28 1 4.4055 -1.3710 -0.0026 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260485636.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:29 Heat of formation + Delta-G solvation = 67.506045 kcal Electronic energy + Delta-G solvation = -11918.600093 eV Core-core repulsion = 9777.949114 eV Total energy + Delta-G solvation = -2140.650979 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.69722 -35.53528 -32.80351 -32.12284 -29.53593 -27.81270 -26.46686 -23.92363 -21.27521 -20.59040 -19.10117 -16.71025 -16.09741 -15.09919 -14.67788 -14.53960 -13.98271 -13.29238 -12.77679 -12.72196 -12.24507 -12.11596 -11.95111 -11.50799 -11.02293 -10.71405 -10.43610 -9.94139 -9.87331 -9.07839 -8.95992 -8.42738 -8.01771 -7.43126 -6.03167 -4.07200 2.33075 2.91125 3.28522 3.36382 3.38251 3.41644 4.42828 4.78953 5.22943 5.27103 5.31999 5.44171 5.50325 5.77037 6.04918 6.13624 6.36794 6.77976 6.91208 7.15234 7.43627 7.57479 7.69623 7.93282 8.11339 8.22504 8.30889 8.45093 9.00871 9.57677 11.07495 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.064643 B = 0.008021 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.045923 B = 3490.130031 C = 3621.722394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.388 5.388 3 C 0.040 3.960 4 C -0.194 4.194 5 C 0.163 3.837 6 H 0.069 0.931 7 N -0.840 5.840 8 C 0.000 4.000 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.059 3.941 12 N -0.892 5.892 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.285 1.285 17 C 0.061 3.939 18 N -0.311 5.311 19 H 0.067 0.933 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.168 0.832 23 H 0.328 0.672 24 H 0.344 0.656 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.260 0.740 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 -2.164 6.350 11.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.172 5.172 3 C -0.104 4.104 4 C -0.205 4.205 5 C 0.050 3.950 6 H 0.087 0.913 7 N -0.367 5.367 8 C -0.038 4.038 9 C -0.561 4.561 10 H 0.075 0.925 11 C -0.143 4.143 12 N -0.531 5.531 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.125 4.125 18 N -0.133 5.133 19 H 0.086 0.914 20 H 0.101 0.899 21 H 0.101 0.899 22 H 0.186 0.814 23 H 0.138 0.862 24 H 0.157 0.843 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.272 -3.103 6.742 12.673 hybrid contribution 1.887 1.417 -1.169 2.633 sum -8.385 -1.687 5.573 10.209 Atomic orbital electron populations 1.21693 0.75155 1.03920 1.02612 1.48285 1.06027 1.03998 1.58849 1.22184 0.90968 0.92967 1.04310 1.20350 0.94702 0.94040 1.11437 1.19811 0.87219 0.93992 0.93939 0.91259 1.59173 1.16714 1.06928 1.53933 1.19797 0.95776 0.97106 0.91150 1.21253 1.15316 1.24835 0.94743 0.92494 1.25024 0.97403 0.96141 0.95719 1.69989 1.41012 1.42592 0.99509 0.86559 0.82369 0.81098 0.78102 1.19654 1.21080 1.21089 1.23603 0.94603 0.95024 0.99261 1.77211 1.01892 1.08391 1.25824 0.91434 0.89939 0.89873 0.81434 0.86167 0.84307 0.96579 0.96499 0.93059 0.80630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.12 11.47 59.85 0.69 1.81 15 2 N -0.39 -6.19 4.01 -68.17 -0.27 -6.47 15 3 C 0.04 0.68 11.40 -17.22 -0.20 0.48 15 4 C -0.19 -3.71 5.09 -105.05 -0.53 -4.25 15 5 C 0.16 3.38 3.20 -68.87 -0.22 3.16 15 6 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 7 N -0.84 -16.00 9.10 -5.66 -0.05 -16.05 15 8 C 0.00 0.01 4.60 -27.88 -0.13 -0.12 15 9 C -0.52 -14.21 8.55 -34.43 -0.29 -14.50 15 10 H 0.06 1.49 7.14 -52.49 -0.37 1.11 15 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 12 N -0.89 -26.60 13.29 55.43 0.74 -25.86 15 13 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 15 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 17 C 0.06 1.14 11.40 -17.37 -0.20 0.94 15 18 N -0.31 -5.71 12.58 30.63 0.39 -5.33 15 19 H 0.07 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.08 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.17 2.31 8.06 -52.49 -0.42 1.89 15 23 H 0.33 5.96 8.20 -39.29 -0.32 5.64 15 24 H 0.34 6.64 7.90 -39.29 -0.31 6.33 15 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 28 H 0.18 2.92 7.67 -52.48 -0.40 2.52 15 LS Contribution 247.12 15.07 3.72 3.72 Total: -1.00 -32.01 247.12 -4.99 -37.00 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.50 Total: 7.67 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.98 Total: -10.92 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.80 Total: -53.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.01 -4.99 -37.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485636.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.504 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds