Wall clock time and date at job start Mon Mar 30 2020 02:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34946 * 126.03644 * 2 1 4 4 C 1.35316 * 107.74870 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.04135 * 180.26489 * 4 3 2 6 6 H 1.08997 * 109.46692 * 19.71109 * 5 4 3 7 7 N 1.46895 * 109.47044 * 139.71515 * 5 4 3 8 8 C 1.52996 * 109.46798 * 259.71312 * 5 4 3 9 9 C 1.50706 * 109.46836 * 174.99897 * 8 5 4 10 10 H 1.07998 * 119.99942 * 0.02562 * 9 8 5 11 11 C 1.37883 * 119.99759 * 179.97438 * 9 8 5 12 12 N 1.31513 * 120.00053 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99427 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47727 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.46476 * 120.00555 * 13 11 9 16 16 H 1.48503 * 109.47087 * 239.99971 * 13 11 9 17 17 C 1.39875 * 107.91722 * 0.02562 * 4 3 2 18 18 N 1.30829 * 108.20298 * 0.02562 * 17 4 3 19 19 H 1.08995 * 109.47195 * 269.94647 * 1 2 3 20 20 H 1.08996 * 109.47070 * 29.94956 * 1 2 3 21 21 H 1.09003 * 109.47068 * 149.95013 * 1 2 3 22 22 H 1.07999 * 126.12479 * 0.04451 * 3 2 1 23 23 H 1.00899 * 111.00155 * 60.00061 * 7 5 4 24 24 H 1.00899 * 110.99831 * 183.95451 * 7 5 4 25 25 H 1.09000 * 109.47606 * 294.99951 * 8 5 4 26 26 H 1.09002 * 109.47610 * 55.00475 * 8 5 4 27 27 H 0.97000 * 119.99879 * 179.97438 * 12 11 9 28 28 H 1.08004 * 125.89555 * 179.97438 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5454 0.0048 6 1 4.4986 2.5415 0.3558 7 7 5.7808 0.9685 0.8988 8 6 5.3340 1.6401 -1.4134 9 6 6.4833 2.6148 -1.4315 10 1 6.7805 3.1161 -0.5223 11 6 7.1560 2.8656 -2.6087 12 7 6.7943 2.2547 -3.7158 13 14 8.5801 4.0742 -2.6312 14 1 8.7854 4.6230 -1.2667 15 1 9.8140 3.3770 -3.0748 16 1 8.2734 5.1831 -3.5702 17 6 3.5347 -0.7321 -0.0015 18 7 2.2892 -1.1327 -0.0021 19 1 -0.3633 -0.0010 1.0276 20 1 -0.3633 0.8904 -0.5130 21 1 -0.3633 -0.8896 -0.5146 22 1 1.9280 2.1193 0.0007 23 1 6.0474 0.0442 0.5944 24 1 6.5863 1.5721 0.9699 25 1 5.6852 0.6583 -1.7308 26 1 4.5548 1.9846 -2.0934 27 1 7.2673 2.4314 -4.5440 28 1 4.4055 -1.3710 -0.0026 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260485636.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:28 Heat of formation + Delta-G solvation = 44.065195 kcal Electronic energy + Delta-G solvation = -11919.616564 eV Core-core repulsion = 9777.949114 eV Total energy + Delta-G solvation = -2141.667450 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.02943 -37.23456 -34.57209 -33.61202 -30.91447 -29.76062 -27.65651 -25.74991 -22.99704 -21.87617 -20.58314 -18.63550 -17.54929 -16.59292 -16.31438 -16.14736 -15.25296 -14.88385 -14.42253 -14.08877 -13.76210 -13.57781 -13.41028 -13.03519 -12.83487 -12.47134 -12.28071 -11.83624 -11.53042 -11.04134 -10.58465 -10.24981 -9.50799 -8.99719 -8.17100 -6.29033 1.01557 1.41574 1.42889 1.55384 1.79216 1.95482 2.42804 3.15958 3.70098 4.06878 4.22579 4.38205 4.49006 4.60805 4.61843 4.71101 4.93537 5.05520 5.24742 5.46146 5.64689 5.79881 5.83005 6.21994 6.24087 6.52307 6.79916 6.84748 6.89529 7.40972 8.94041 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.064643 B = 0.008021 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.045923 B = 3490.130031 C = 3621.722394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.382 5.382 3 C 0.051 3.949 4 C -0.230 4.230 5 C 0.180 3.820 6 H 0.069 0.931 7 N -0.829 5.829 8 C 0.011 3.989 9 C -0.532 4.532 10 H 0.067 0.933 11 C 0.000 4.000 12 N -0.935 5.935 13 Si 0.964 3.036 14 H -0.257 1.257 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.048 3.952 18 N -0.332 5.332 19 H 0.089 0.911 20 H 0.110 0.890 21 H 0.089 0.911 22 H 0.200 0.800 23 H 0.332 0.668 24 H 0.343 0.657 25 H -0.013 1.013 26 H -0.016 1.016 27 H 0.261 0.739 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 -1.227 7.356 11.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.165 5.165 3 C -0.096 4.096 4 C -0.242 4.242 5 C 0.067 3.933 6 H 0.088 0.912 7 N -0.356 5.356 8 C -0.028 4.028 9 C -0.570 4.570 10 H 0.086 0.914 11 C -0.197 4.197 12 N -0.575 5.575 13 Si 0.789 3.211 14 H -0.181 1.181 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.137 4.137 18 N -0.155 5.155 19 H 0.107 0.893 20 H 0.129 0.871 21 H 0.108 0.892 22 H 0.216 0.784 23 H 0.144 0.856 24 H 0.156 0.844 25 H 0.005 0.995 26 H 0.002 0.998 27 H 0.070 0.930 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.861 -2.186 7.774 13.534 hybrid contribution 1.943 1.100 -1.477 2.677 sum -8.918 -1.086 6.297 10.971 Atomic orbital electron populations 1.22167 0.71915 1.05733 1.04616 1.48734 1.07827 1.03075 1.56889 1.22643 0.90425 0.94478 1.02052 1.20304 0.95102 0.94199 1.14582 1.19475 0.88188 0.94723 0.90918 0.91246 1.59179 1.16447 1.07052 1.52962 1.19688 0.94574 0.94926 0.93574 1.21658 1.15513 1.24748 0.95080 0.91449 1.25955 1.00335 0.98067 0.95359 1.70134 1.42663 1.44474 1.00261 0.85419 0.78601 0.78460 0.78657 1.18110 1.20867 1.20912 1.23763 0.95194 0.95128 0.99636 1.77148 1.02022 1.09777 1.26570 0.89274 0.87113 0.89188 0.78367 0.85646 0.84447 0.99461 0.99770 0.93031 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 11.47 127.77 1.47 3.15 15 2 N -0.38 -11.42 4.01 -369.57 -1.48 -12.90 15 3 C 0.05 1.61 11.40 83.54 0.95 2.56 15 4 C -0.23 -8.70 5.09 -20.14 -0.10 -8.81 15 5 C 0.18 7.43 3.20 44.17 0.14 7.57 15 6 H 0.07 2.85 8.14 -2.39 -0.02 2.83 15 7 N -0.83 -31.15 9.10 -171.81 -1.56 -32.71 15 8 C 0.01 0.59 4.60 29.85 0.14 0.72 15 9 C -0.53 -28.92 8.55 25.60 0.22 -28.70 15 10 H 0.07 3.45 7.14 -2.91 -0.02 3.43 15 11 C 0.00 0.03 5.46 84.66 0.46 0.49 15 12 N -0.93 -56.71 13.29 21.45 0.28 -56.42 15 13 Si 0.96 43.47 29.54 68.60 2.03 45.50 15 14 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 17 C 0.05 1.77 11.40 85.24 0.97 2.74 15 18 N -0.33 -11.92 12.58 -57.02 -0.72 -12.64 15 19 H 0.09 1.25 8.14 -2.39 -0.02 1.23 15 20 H 0.11 1.36 8.14 -2.39 -0.02 1.34 15 21 H 0.09 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.20 4.87 8.06 -2.91 -0.02 4.85 15 23 H 0.33 12.07 8.20 -89.69 -0.74 11.34 15 24 H 0.34 12.94 7.90 -89.69 -0.71 12.23 15 25 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 15 26 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 15 27 H 0.26 14.93 8.31 -92.71 -0.77 14.16 15 28 H 0.18 6.16 7.67 -2.91 -0.02 6.13 15 Total: -1.00 -68.66 247.12 2.52 -66.14 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.28 Total: 23.30 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 4.25 Total: -20.27 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -3.48 Total: -114.68 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.66 2.52 -66.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485636.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.207 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds