Wall clock time and date at job start Mon Mar 30 2020 02:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35044 * 126.39834 * 2 1 4 4 N 1.30494 * 108.70054 * 179.97438 * 3 2 1 5 5 C 1.34128 * 109.25729 * 359.75015 * 4 3 2 6 6 C 1.34676 * 108.01882 * 0.40126 * 5 4 3 7 7 C 1.50693 * 126.59089 * 179.87622 * 6 5 4 8 8 H 1.08999 * 109.47694 * 155.23488 * 7 6 5 9 9 N 1.46902 * 109.47277 * 35.23097 * 7 6 5 10 10 C 1.53000 * 109.47058 * 275.23606 * 7 6 5 11 11 C 1.50703 * 109.47371 * 184.99893 * 10 7 6 12 12 H 1.08004 * 120.00010 * 0.02562 * 11 10 7 13 13 C 1.37875 * 120.00331 * 179.97438 * 11 10 7 14 14 N 1.31519 * 120.00043 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99986 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47089 * 60.00430 * 15 13 11 17 17 H 1.48504 * 109.46767 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47237 * 299.99756 * 15 13 11 19 19 H 1.09001 * 109.47217 * 264.83495 * 1 2 3 20 20 H 1.08999 * 109.47521 * 24.83440 * 1 2 3 21 21 H 1.09000 * 109.47516 * 144.83176 * 1 2 3 22 22 H 1.07996 * 125.64815 * 359.96854 * 3 2 1 23 23 H 1.08003 * 125.99396 * 180.25221 * 5 4 3 24 24 H 1.00892 * 111.00431 * 295.19372 * 9 7 6 25 25 H 1.00906 * 110.99620 * 59.14805 * 9 7 6 26 26 H 1.09003 * 109.47469 * 65.00273 * 10 7 6 27 27 H 1.08999 * 109.47313 * 305.00047 * 10 7 6 28 28 H 0.96995 * 120.00064 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0006 5 6 3.5460 -0.6505 0.0064 6 6 2.2771 -1.1018 0.0007 7 6 1.8362 -2.5428 0.0015 8 1 0.8354 -2.6164 0.4268 9 7 2.7705 -3.3403 0.8072 10 6 1.8205 -3.0721 -1.4339 11 6 1.2635 -4.4724 -1.4470 12 1 0.9514 -4.9380 -0.5238 13 6 1.1512 -5.1586 -2.6375 14 7 1.5307 -4.5915 -3.7618 15 14 0.4600 -6.8940 -2.6537 16 1 -0.9239 -6.8806 -2.1155 17 1 0.4449 -7.4078 -4.0469 18 1 1.3102 -7.7733 -1.8116 19 1 -0.3634 -0.0925 1.0235 20 1 -0.3634 0.9326 -0.4316 21 1 -0.3634 -0.8401 -0.5919 22 1 1.9334 2.1144 -0.0005 23 1 4.4368 -1.2612 0.0121 24 1 3.6889 -3.3523 0.3897 25 1 2.8094 -3.0014 1.7568 26 1 2.8365 -3.0817 -1.8288 27 1 1.1964 -2.4270 -2.0523 28 1 1.4521 -5.0744 -4.5993 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260509061.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:11 Heat of formation + Delta-G solvation = 30.230603 kcal Electronic energy + Delta-G solvation = -12152.751950 eV Core-core repulsion = 10010.484587 eV Total energy + Delta-G solvation = -2142.267363 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.00556 -37.19077 -34.86232 -34.51363 -30.28346 -29.91134 -27.76986 -26.13510 -23.24525 -22.14376 -20.48887 -18.59488 -17.80954 -16.95721 -16.49354 -16.31194 -15.43596 -15.20287 -14.49597 -14.18808 -14.08943 -13.75388 -13.45348 -13.14921 -12.76309 -12.51403 -12.29768 -11.62845 -11.30466 -10.96785 -10.53000 -10.43955 -9.69976 -9.20575 -8.13286 -6.21202 1.12098 1.43868 1.47122 1.54703 1.98972 2.18576 2.46918 3.19912 3.75736 3.89128 3.92738 4.03434 4.27174 4.41720 4.49857 4.69802 4.76522 4.93127 5.33612 5.41021 5.63994 5.74660 5.84132 6.23402 6.36035 6.42337 6.74215 6.93316 7.10990 7.46492 8.98337 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.054358 B = 0.009156 C = 0.008906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.983883 B = 3057.246464 C = 3143.153124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.459 5.459 3 C 0.175 3.825 4 N -0.531 5.531 5 C -0.057 4.057 6 C -0.049 4.049 7 C 0.186 3.814 8 H 0.075 0.925 9 N -0.816 5.816 10 C 0.050 3.950 11 C -0.510 4.510 12 H 0.065 0.935 13 C -0.004 4.004 14 N -0.940 5.940 15 Si 0.964 3.036 16 H -0.266 1.266 17 H -0.289 1.289 18 H -0.270 1.270 19 H 0.095 0.905 20 H 0.120 0.880 21 H 0.071 0.929 22 H 0.245 0.755 23 H 0.162 0.838 24 H 0.341 0.659 25 H 0.342 0.658 26 H -0.012 1.012 27 H -0.012 1.012 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 8.412 8.639 12.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.141 5.141 3 C -0.107 4.107 4 N -0.250 5.250 5 C -0.204 4.204 6 C -0.167 4.167 7 C 0.072 3.928 8 H 0.093 0.907 9 N -0.345 5.345 10 C 0.012 3.988 11 C -0.548 4.548 12 H 0.083 0.917 13 C -0.201 4.201 14 N -0.582 5.582 15 Si 0.789 3.211 16 H -0.191 1.191 17 H -0.214 1.214 18 H -0.195 1.195 19 H 0.114 0.886 20 H 0.138 0.862 21 H 0.090 0.910 22 H 0.261 0.739 23 H 0.179 0.821 24 H 0.154 0.846 25 H 0.155 0.845 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.325 8.265 8.317 12.187 hybrid contribution -0.232 -0.430 -0.448 0.663 sum -3.557 7.835 7.868 11.660 Atomic orbital electron populations 1.22320 0.74583 1.05933 1.04815 1.45538 1.09006 1.06013 1.53548 1.25692 0.85087 0.94876 1.05090 1.70153 1.21444 1.11911 1.21494 1.22009 0.96190 0.91526 1.10681 1.22909 0.92029 0.92201 1.09585 1.19765 0.96005 0.81416 0.95610 0.90707 1.58869 1.13912 1.56383 1.05301 1.18895 0.94938 0.95002 0.89969 1.21456 1.40189 0.99924 0.93199 0.91664 1.25932 0.96338 1.02473 0.95343 1.70110 1.49852 1.39422 0.98769 0.85520 0.79210 0.79648 0.76727 1.19111 1.21438 1.19529 0.88605 0.86195 0.90975 0.73932 0.82094 0.84587 0.84518 0.99361 0.99354 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.36 10.74 127.77 1.37 2.74 15 2 N -0.46 -13.68 3.15 -537.91 -1.70 -15.37 15 3 C 0.17 4.95 12.56 180.26 2.26 7.22 15 4 N -0.53 -19.01 11.25 -200.31 -2.25 -21.26 15 5 C -0.06 -2.12 11.25 83.53 0.94 -1.18 15 6 C -0.05 -1.78 5.95 40.95 0.24 -1.54 15 7 C 0.19 7.43 2.92 44.17 0.13 7.56 15 8 H 0.07 2.94 7.75 -2.39 -0.02 2.92 15 9 N -0.82 -29.59 8.79 -171.81 -1.51 -31.10 15 10 C 0.05 2.58 4.56 29.85 0.14 2.71 15 11 C -0.51 -28.42 8.84 25.60 0.23 -28.19 15 12 H 0.07 3.55 7.74 -2.91 -0.02 3.52 15 13 C 0.00 -0.25 5.46 84.65 0.46 0.22 15 14 N -0.94 -57.52 13.29 21.45 0.28 -57.24 15 15 Si 0.96 44.55 29.54 68.60 2.03 46.58 15 16 H -0.27 -11.69 7.11 99.48 0.71 -10.99 15 17 H -0.29 -13.19 7.11 99.48 0.71 -12.48 15 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 19 H 0.10 1.60 8.14 -2.39 -0.02 1.58 15 20 H 0.12 1.66 8.13 -2.39 -0.02 1.64 15 21 H 0.07 1.85 7.94 -2.39 -0.02 1.83 15 22 H 0.24 4.23 8.06 -2.91 -0.02 4.21 15 23 H 0.16 5.71 7.64 -2.91 -0.02 5.69 15 24 H 0.34 12.29 8.29 -89.70 -0.74 11.55 15 25 H 0.34 10.29 9.02 -89.69 -0.81 9.48 15 26 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 15 27 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 15 28 H 0.26 15.11 8.31 -92.71 -0.77 14.34 15 Total: -1.00 -70.67 246.92 2.24 -68.43 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.39 Total: 20.44 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 5.77 Total: -10.47 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -5.17 Total: -124.98 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -70.67 2.24 -68.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260509061.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.658 kcal (2) G-P(sol) polarization free energy of solvation -70.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds