Wall clock time and date at job start Mon Mar 30 2020 02:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40083 * 126.03725 * 2 1 4 4 C 1.30838 * 108.20473 * 179.97438 * 3 2 1 5 5 C 1.39868 * 108.20125 * 359.78095 * 4 3 2 6 6 C 1.34943 * 126.03877 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.12550 * 359.97438 * 6 2 1 8 8 H 1.09005 * 109.46976 * 334.99567 * 7 6 2 9 9 C 1.50700 * 109.47263 * 94.99388 * 7 6 2 10 10 H 1.07996 * 119.99862 * 0.02562 * 9 7 6 11 11 C 1.37873 * 119.99701 * 179.97438 * 9 7 6 12 12 N 1.31518 * 120.00603 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99657 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47363 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46889 * 120.00393 * 13 11 9 16 16 H 1.48503 * 109.47152 * 240.00119 * 13 11 9 17 17 C 1.52993 * 109.47154 * 215.00068 * 7 6 2 18 18 N 1.46906 * 109.47378 * 64.99583 * 17 7 6 19 19 H 1.09000 * 109.47278 * 270.02614 * 1 2 3 20 20 H 1.09004 * 109.46716 * 30.02074 * 1 2 3 21 21 H 1.08994 * 109.47402 * 150.02647 * 1 2 3 22 22 H 1.08004 * 125.89752 * 179.97438 * 4 3 2 23 23 H 1.08005 * 126.03769 * 180.23059 * 5 4 3 24 24 H 0.96995 * 120.00483 * 179.97438 * 12 11 9 25 25 H 1.09004 * 109.46862 * 304.99686 * 17 7 6 26 26 H 1.09000 * 109.47250 * 184.99709 * 17 7 6 27 27 H 1.00904 * 110.99860 * 56.05050 * 18 17 7 28 28 H 1.00902 * 110.99567 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6666 0.0060 6 6 2.2589 -1.0912 0.0005 7 6 1.7974 -2.5258 0.0017 8 1 0.7996 -2.5861 0.4365 9 6 1.7607 -3.0429 -1.4134 10 1 2.0438 -2.3974 -2.2316 11 6 1.3668 -4.3403 -1.6631 12 7 1.0226 -5.1266 -0.6666 13 14 1.3221 -4.9815 -3.4171 14 1 1.7533 -3.9078 -4.3478 15 1 2.2389 -6.1429 -3.5430 16 1 -0.0610 -5.4039 -3.7546 17 6 2.7662 -3.3726 0.8293 18 7 2.7126 -2.9458 2.2340 19 1 -0.3634 0.0005 1.0276 20 1 -0.3633 0.8898 -0.5142 21 1 -0.3634 -0.8902 -0.5134 22 1 4.4054 1.3710 0.0003 23 1 4.4211 -1.2963 0.0113 24 1 0.7451 -6.0392 -0.8424 25 1 3.7792 -3.2422 0.4484 26 1 2.4834 -4.4228 0.7576 27 1 1.7704 -2.9962 2.5915 28 1 3.3441 -3.4909 2.8017 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260583494.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:58 Heat of formation + Delta-G solvation = 49.290641 kcal Electronic energy + Delta-G solvation = -12426.983700 eV Core-core repulsion = 10285.542842 eV Total energy + Delta-G solvation = -2141.440858 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.87105 -37.06259 -34.16954 -33.90775 -31.83350 -28.88978 -27.40432 -25.85300 -23.32912 -21.58470 -20.14968 -18.55104 -17.75228 -16.60319 -16.08390 -15.94440 -15.24493 -15.03514 -14.39940 -13.96648 -13.89001 -13.48550 -13.17895 -13.06063 -12.88276 -12.57668 -11.98406 -11.77890 -11.44022 -11.32872 -10.58380 -9.89331 -9.31584 -9.11602 -8.16175 -6.32943 1.25989 1.39336 1.44034 1.54350 1.91559 2.20952 2.43067 3.08460 3.91438 4.04326 4.28658 4.45524 4.47425 4.62638 4.68243 5.01282 5.05587 5.09471 5.31281 5.46842 5.80385 5.85957 6.02858 6.07338 6.42225 6.50969 6.68020 6.87523 7.04388 7.35768 8.84815 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.036023 B = 0.013074 C = 0.011568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.104103 B = 2141.118497 C = 2419.913655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.390 5.390 3 N -0.349 5.349 4 C 0.043 3.957 5 C -0.296 4.296 6 C 0.137 3.863 7 C 0.113 3.887 8 H 0.015 0.985 9 C -0.527 4.527 10 H 0.044 0.956 11 C 0.027 3.973 12 N -0.907 5.907 13 Si 0.955 3.045 14 H -0.275 1.275 15 H -0.276 1.276 16 H -0.277 1.277 17 C 0.082 3.918 18 N -0.848 5.848 19 H 0.080 0.920 20 H 0.097 0.903 21 H 0.081 0.919 22 H 0.209 0.791 23 H 0.136 0.864 24 H 0.266 0.734 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.331 0.669 28 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 3.951 1.960 4.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.172 5.172 3 N -0.170 5.170 4 C -0.142 4.142 5 C -0.325 4.325 6 C 0.009 3.991 7 C 0.092 3.908 8 H 0.033 0.967 9 C -0.566 4.566 10 H 0.062 0.938 11 C -0.173 4.173 12 N -0.546 5.546 13 Si 0.781 3.219 14 H -0.200 1.200 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.049 4.049 18 N -0.377 5.377 19 H 0.098 0.902 20 H 0.116 0.884 21 H 0.100 0.900 22 H 0.225 0.775 23 H 0.154 0.846 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.142 0.858 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.057 5.510 1.715 5.771 hybrid contribution 0.112 -2.233 -0.647 2.327 sum 0.169 3.278 1.068 3.451 Atomic orbital electron populations 1.21882 0.73990 1.04505 1.03613 1.48583 1.07101 1.03365 1.58184 1.77054 1.02443 1.09177 1.28367 1.24168 0.95584 0.95104 0.99340 1.21118 0.96470 0.94902 1.20027 1.21665 0.91453 0.90996 0.94940 1.17366 0.94230 0.83947 0.95225 0.96688 1.21153 1.45969 0.97518 0.91918 0.93751 1.25583 0.94213 0.96693 1.00806 1.69955 1.44931 1.07685 1.32029 0.85546 0.77918 0.78195 0.80272 1.19957 1.20205 1.20252 1.21648 0.97746 0.98723 0.86802 1.58902 1.12438 1.62614 1.03700 0.90175 0.88443 0.90014 0.77472 0.84628 0.92500 0.93773 0.93576 0.85760 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.44 11.06 127.77 1.41 4.85 15 2 N -0.39 -16.46 4.01 -356.03 -1.43 -17.89 15 3 N -0.35 -14.34 12.58 -57.02 -0.72 -15.05 15 4 C 0.04 1.61 12.03 85.24 1.02 2.64 15 5 C -0.30 -12.56 9.96 21.99 0.22 -12.34 15 6 C 0.14 6.24 5.53 41.41 0.23 6.47 15 7 C 0.11 5.47 1.93 -12.29 -0.02 5.45 15 8 H 0.02 0.78 7.50 -2.38 -0.02 0.76 15 9 C -0.53 -27.91 8.55 25.60 0.22 -27.69 15 10 H 0.04 2.45 7.74 -2.91 -0.02 2.42 15 11 C 0.03 1.42 5.29 84.65 0.45 1.87 15 12 N -0.91 -48.19 11.29 21.45 0.24 -47.95 15 13 Si 0.95 41.70 29.54 68.60 2.03 43.73 15 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 15 H -0.28 -11.78 7.11 99.48 0.71 -11.08 15 16 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 17 C 0.08 3.73 5.70 86.30 0.49 4.22 15 18 N -0.85 -32.28 9.34 -186.71 -1.74 -34.03 15 19 H 0.08 2.40 8.14 -2.39 -0.02 2.38 15 20 H 0.10 2.82 8.14 -2.39 -0.02 2.80 15 21 H 0.08 2.92 7.55 -2.39 -0.02 2.90 15 22 H 0.21 5.81 8.06 -2.91 -0.02 5.79 15 23 H 0.14 5.56 7.23 -2.91 -0.02 5.54 15 24 H 0.27 13.40 8.31 -92.71 -0.77 12.63 15 25 H 0.04 2.03 7.02 -2.38 -0.02 2.01 15 26 H 0.05 2.32 5.95 -2.39 -0.01 2.30 15 27 H 0.33 12.30 8.99 -89.69 -0.81 11.49 15 28 H 0.34 11.03 9.08 -89.69 -0.81 10.21 15 Total: -1.00 -59.93 241.82 1.96 -57.97 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.44 Total: 27.75 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 4.02 Total: -14.53 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -3.65 Total: -114.92 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -59.93 1.96 -57.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260583494.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.261 kcal (2) G-P(sol) polarization free energy of solvation -59.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds