Wall clock time and date at job start Mon Mar 30 2020 03:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86802 * 120.00120 * 2 1 4 4 H 1.48503 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47249 * 300.00382 * 3 2 1 6 6 H 1.48505 * 109.46902 * 60.00319 * 3 2 1 7 7 C 1.40305 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.40076 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.35026 * 120.00049 * 172.80778 * 9 7 2 11 11 C 1.50697 * 120.00192 * 355.39375 * 10 9 7 12 12 C 1.53006 * 109.47425 * 125.47083 * 11 10 9 13 13 H 1.08998 * 109.49791 * 305.07486 * 12 11 10 14 14 C 1.53117 * 109.50169 * 185.00129 * 12 11 10 15 15 C 1.53125 * 109.15821 * 182.40545 * 14 12 11 16 16 C 1.53036 * 109.27914 * 57.65004 * 15 14 12 17 17 N 1.46844 * 109.52428 * 300.81939 * 16 15 14 18 18 C 1.46855 * 111.19582 * 61.74527 * 17 16 15 19 19 H 0.97003 * 120.00078 * 359.97438 * 1 2 3 20 20 H 1.08001 * 119.99752 * 352.81413 * 9 7 2 21 21 H 1.08007 * 120.00048 * 175.10444 * 10 9 7 22 22 H 1.09000 * 109.46786 * 245.46545 * 11 10 9 23 23 H 1.09001 * 109.47314 * 5.46385 * 11 10 9 24 24 H 1.09007 * 109.52188 * 302.30282 * 14 12 11 25 25 H 1.08993 * 109.52856 * 62.49840 * 14 12 11 26 26 H 1.09004 * 109.50098 * 177.59229 * 15 14 12 27 27 H 1.09002 * 109.49753 * 297.67034 * 15 14 12 28 28 H 1.08992 * 109.46098 * 60.84062 * 16 15 14 29 29 H 1.09003 * 109.45766 * 180.81726 * 16 15 14 30 30 H 1.00899 * 111.00150 * 185.83913 * 17 16 15 31 31 H 1.08999 * 109.45872 * 178.24013 * 18 17 16 32 32 H 1.09000 * 109.46022 * 58.27522 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7010 1.3463 -0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8822 2.3964 1.2126 7 6 2.0084 -1.2151 -0.0005 8 1 3.0884 -1.2151 -0.0001 9 6 1.3081 -2.4282 -0.0005 10 6 1.9752 -3.5929 -0.1475 11 6 3.4582 -3.5833 -0.4151 12 6 4.1709 -4.4431 0.6307 13 1 3.9064 -4.0951 1.6292 14 6 5.6857 -4.3341 0.4359 15 6 6.3892 -5.2436 1.4471 16 6 5.8982 -6.6811 1.2608 17 7 4.4440 -6.7325 1.4581 18 6 3.7443 -5.9037 0.4681 19 1 -0.4850 0.8401 0.0004 20 1 0.2345 -2.4319 0.1169 21 1 1.4468 -4.5316 -0.0685 22 1 3.6505 -3.9867 -1.4093 23 1 3.8308 -2.5604 -0.3598 24 1 5.9461 -4.6446 -0.5761 25 1 6.0000 -3.3024 0.5936 26 1 7.4664 -5.2031 1.2852 27 1 6.1602 -4.9085 2.4587 28 1 6.1403 -7.0198 0.2536 29 1 6.3865 -7.3288 1.9890 30 1 4.1093 -7.6840 1.4345 31 1 2.6682 -5.9870 0.6204 32 1 3.9964 -6.2462 -0.5355 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260609194.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:11 Heat of formation + Delta-G solvation = -16.662283 kcal Electronic energy + Delta-G solvation = -12189.182310 eV Core-core repulsion = 10148.421863 eV Total energy + Delta-G solvation = -2040.760448 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.34698 -34.67647 -32.91065 -31.47341 -30.09342 -26.05825 -24.10672 -23.30039 -21.25654 -19.11971 -18.50400 -16.30724 -15.99757 -14.74736 -14.44719 -14.07878 -13.50300 -13.09866 -12.96444 -12.57744 -12.19691 -11.95540 -11.29512 -11.25786 -10.88833 -10.69679 -10.49705 -10.10806 -9.89841 -9.84901 -9.38837 -9.31676 -8.69308 -8.16728 -7.48857 -6.65112 -4.15327 2.99339 3.13973 3.20315 3.98597 4.05274 4.51508 5.16809 5.23666 5.37076 5.51730 5.64028 5.75188 5.91532 5.95127 6.10012 6.22728 6.33643 6.41181 6.61581 6.75279 6.78168 6.95637 7.28114 7.32132 7.37824 7.39136 7.63571 7.74956 7.98520 8.51175 8.79871 9.21905 9.38090 10.39141 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.055834 B = 0.007813 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.361879 B = 3583.020078 C = 3954.082290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.048 3.952 10 C -0.417 4.417 11 C -0.036 4.036 12 C -0.077 4.077 13 H 0.072 0.928 14 C -0.119 4.119 15 C -0.117 4.117 16 C 0.060 3.940 17 N -0.693 5.693 18 C 0.069 3.931 19 H 0.278 0.722 20 H 0.076 0.924 21 H 0.063 0.937 22 H 0.022 0.978 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.334 0.666 31 H 0.078 0.922 32 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.891 -6.790 1.150 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.028 3.972 10 C -0.439 4.439 11 C -0.074 4.074 12 C -0.096 4.096 13 H 0.091 0.909 14 C -0.157 4.157 15 C -0.155 4.155 16 C -0.070 4.070 17 N -0.324 5.324 18 C -0.060 4.060 19 H 0.088 0.912 20 H 0.094 0.906 21 H 0.081 0.919 22 H 0.040 0.960 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.151 0.849 31 H 0.097 0.903 32 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.687 -6.132 1.629 10.758 hybrid contribution 0.329 0.208 -0.810 0.899 sum 9.016 -5.924 0.819 10.819 Atomic orbital electron populations 1.69590 1.07664 1.29053 1.39104 1.26116 0.94748 1.01606 0.91953 0.86286 0.80910 0.81245 0.78335 1.18479 1.20065 1.20031 1.19744 0.94802 0.90715 1.44203 0.90511 1.19883 0.96266 0.92321 0.88739 1.21916 0.94158 0.95232 1.32555 1.20065 0.95094 0.98126 0.94101 1.21251 0.92711 0.94040 1.01597 0.90948 1.21704 0.96779 0.99164 0.98032 1.21591 0.98520 0.94756 1.00635 1.21871 0.89055 0.97459 0.98576 1.60317 1.04053 1.14660 1.53329 1.22006 0.98670 0.93858 0.91435 0.91185 0.90635 0.91880 0.95964 0.91775 0.93018 0.92094 0.92452 0.91380 0.95890 0.91650 0.84915 0.90333 0.96198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.69 12.88 55.57 0.72 -21.97 16 2 C 0.07 1.89 5.50 -17.26 -0.09 1.79 16 3 Si 0.91 19.75 29.56 -169.99 -5.03 14.72 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.46 -12.90 8.61 -38.12 -0.33 -13.23 16 8 H 0.08 2.08 5.52 -52.49 -0.29 1.79 16 9 C 0.05 1.34 9.38 -40.03 -0.38 0.97 16 10 C -0.42 -10.56 9.20 -35.45 -0.33 -10.88 16 11 C -0.04 -0.81 4.97 -27.88 -0.14 -0.95 16 12 C -0.08 -1.48 2.34 -90.54 -0.21 -1.69 16 13 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 14 C -0.12 -1.95 5.29 -26.61 -0.14 -2.09 16 15 C -0.12 -1.64 6.09 -26.65 -0.16 -1.80 16 16 C 0.06 0.80 6.55 -3.84 -0.03 0.77 16 17 N -0.69 -10.39 6.85 -113.82 -0.78 -11.17 16 18 C 0.07 1.20 5.63 -3.83 -0.02 1.17 16 19 H 0.28 6.92 8.29 -40.82 -0.34 6.58 16 20 H 0.08 2.21 7.45 -52.49 -0.39 1.82 16 21 H 0.06 1.55 6.97 -52.48 -0.37 1.19 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 1.52 5.31 -51.93 -0.28 1.24 16 24 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.33 4.22 8.90 -39.29 -0.35 3.87 16 31 H 0.08 1.45 6.76 -51.93 -0.35 1.10 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 256.65 15.07 3.87 3.87 Total: -1.00 -27.92 256.65 -8.01 -35.93 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.96 Total: 4.56 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -1.82 Total: -25.94 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: -0.06 Total: -33.14 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.92 -8.01 -35.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260609194.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.270 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds