Wall clock time and date at job start Mon Mar 30 2020 03:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86802 * 120.00120 * 2 1 4 4 H 1.48503 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47249 * 300.00382 * 3 2 1 6 6 H 1.48505 * 109.46902 * 60.00319 * 3 2 1 7 7 C 1.40305 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.40076 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.35026 * 120.00049 * 172.80778 * 9 7 2 11 11 C 1.50697 * 120.00192 * 355.39375 * 10 9 7 12 12 C 1.53006 * 109.47425 * 125.47083 * 11 10 9 13 13 H 1.08998 * 109.49791 * 305.07486 * 12 11 10 14 14 C 1.53117 * 109.50169 * 185.00129 * 12 11 10 15 15 C 1.53125 * 109.15821 * 182.40545 * 14 12 11 16 16 C 1.53036 * 109.27914 * 57.65004 * 15 14 12 17 17 N 1.46844 * 109.52428 * 300.81939 * 16 15 14 18 18 C 1.46855 * 111.19582 * 61.74527 * 17 16 15 19 19 H 0.97003 * 120.00078 * 359.97438 * 1 2 3 20 20 H 1.08001 * 119.99752 * 352.81413 * 9 7 2 21 21 H 1.08007 * 120.00048 * 175.10444 * 10 9 7 22 22 H 1.09000 * 109.46786 * 245.46545 * 11 10 9 23 23 H 1.09001 * 109.47314 * 5.46385 * 11 10 9 24 24 H 1.09007 * 109.52188 * 302.30282 * 14 12 11 25 25 H 1.08993 * 109.52856 * 62.49840 * 14 12 11 26 26 H 1.09004 * 109.50098 * 177.59229 * 15 14 12 27 27 H 1.09002 * 109.49753 * 297.67034 * 15 14 12 28 28 H 1.08992 * 109.46098 * 60.84062 * 16 15 14 29 29 H 1.09003 * 109.45766 * 180.81726 * 16 15 14 30 30 H 1.00899 * 111.00150 * 185.83913 * 17 16 15 31 31 H 1.08999 * 109.45872 * 178.24013 * 18 17 16 32 32 H 1.09000 * 109.46022 * 58.27522 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7010 1.3463 -0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8822 2.3964 1.2126 7 6 2.0084 -1.2151 -0.0005 8 1 3.0884 -1.2151 -0.0001 9 6 1.3081 -2.4282 -0.0005 10 6 1.9752 -3.5929 -0.1475 11 6 3.4582 -3.5833 -0.4151 12 6 4.1709 -4.4431 0.6307 13 1 3.9064 -4.0951 1.6292 14 6 5.6857 -4.3341 0.4359 15 6 6.3892 -5.2436 1.4471 16 6 5.8982 -6.6811 1.2608 17 7 4.4440 -6.7325 1.4581 18 6 3.7443 -5.9037 0.4681 19 1 -0.4850 0.8401 0.0004 20 1 0.2345 -2.4319 0.1169 21 1 1.4468 -4.5316 -0.0685 22 1 3.6505 -3.9867 -1.4093 23 1 3.8308 -2.5604 -0.3598 24 1 5.9461 -4.6446 -0.5761 25 1 6.0000 -3.3024 0.5936 26 1 7.4664 -5.2031 1.2852 27 1 6.1602 -4.9085 2.4587 28 1 6.1403 -7.0198 0.2536 29 1 6.3865 -7.3288 1.9890 30 1 4.1093 -7.6840 1.4345 31 1 2.6682 -5.9870 0.6204 32 1 3.9964 -6.2462 -0.5355 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260609194.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:11 Heat of formation + Delta-G solvation = -34.105447 kcal Electronic energy + Delta-G solvation = -12189.938703 eV Core-core repulsion = 10148.421863 eV Total energy + Delta-G solvation = -2041.516840 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68864 -36.60955 -34.67653 -32.84128 -31.75650 -27.86880 -25.95556 -24.59976 -22.68287 -20.60543 -20.39565 -18.27672 -17.34902 -16.58836 -15.95614 -15.36105 -14.92164 -14.82680 -14.50869 -14.01080 -13.74777 -13.40336 -13.08070 -12.99484 -12.60624 -12.13295 -11.92044 -11.76548 -11.58088 -11.37069 -11.32591 -10.99405 -10.62967 -9.59548 -9.34451 -8.66218 -6.26986 1.24246 1.36759 1.52851 1.97910 2.22652 3.33629 3.43472 3.95303 4.06222 4.08866 4.31629 4.53142 4.67177 4.70044 4.82717 4.84719 4.91878 5.01046 5.10437 5.13845 5.23210 5.33551 5.39605 5.40338 5.66563 5.73773 5.94003 6.13839 6.40241 6.58308 6.68615 7.10275 7.24130 8.40789 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.055834 B = 0.007813 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.361879 B = 3583.020078 C = 3954.082290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.023 3.977 3 Si 0.985 3.015 4 H -0.256 1.256 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.079 0.921 9 C 0.014 3.986 10 C -0.404 4.404 11 C -0.033 4.033 12 C -0.072 4.072 13 H 0.045 0.955 14 C -0.117 4.117 15 C -0.115 4.115 16 C 0.058 3.942 17 N -0.701 5.701 18 C 0.076 3.924 19 H 0.288 0.712 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.032 0.968 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.091 0.909 30 H 0.349 0.651 31 H 0.059 0.941 32 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.046 -6.957 1.159 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.189 4.189 3 Si 0.806 3.194 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.523 4.523 8 H 0.097 0.903 9 C -0.006 4.006 10 C -0.426 4.426 11 C -0.070 4.070 12 C -0.092 4.092 13 H 0.064 0.936 14 C -0.154 4.154 15 C -0.152 4.152 16 C -0.071 4.071 17 N -0.333 5.333 18 C -0.053 4.053 19 H 0.098 0.902 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.168 0.832 31 H 0.078 0.922 32 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 10.836 -6.332 1.641 12.657 hybrid contribution -0.394 0.143 -0.812 0.914 sum 10.442 -6.189 0.829 12.167 Atomic orbital electron populations 1.69657 1.09293 1.30735 1.39384 1.27079 0.95640 1.05332 0.90860 0.85115 0.79338 0.75980 0.78996 1.17986 1.18841 1.18872 1.19932 0.95021 0.91511 1.45819 0.90288 1.19943 0.95285 0.93926 0.91428 1.22235 0.96015 0.94468 1.29849 1.20016 0.93153 0.98160 0.95701 1.21079 0.94805 0.94585 0.98688 0.93640 1.21662 0.94439 0.99875 0.99468 1.21597 0.99957 0.94567 0.99124 1.21982 0.87740 0.97410 0.99963 1.60242 1.05257 1.15427 1.52380 1.21774 0.97892 0.93138 0.92475 0.90201 0.93205 0.91616 0.94981 0.93342 0.92098 0.92468 0.89630 0.92353 0.94956 0.89116 0.83230 0.92218 0.95561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.27 12.88 21.89 0.28 -47.99 16 2 C 0.02 1.22 5.50 85.37 0.47 1.69 16 3 Si 0.99 40.30 29.56 68.60 2.03 42.33 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 5 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 7 C -0.49 -28.09 8.61 23.22 0.20 -27.89 16 8 H 0.08 4.37 5.52 -2.91 -0.02 4.35 16 9 C 0.01 0.83 9.38 21.98 0.21 1.03 16 10 C -0.40 -21.00 9.20 24.95 0.23 -20.77 16 11 C -0.03 -1.47 4.97 29.85 0.15 -1.32 16 12 C -0.07 -2.75 2.34 -10.74 -0.03 -2.77 16 13 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 14 C -0.12 -3.60 5.29 30.68 0.16 -3.43 16 15 C -0.11 -2.87 6.09 30.65 0.19 -2.69 16 16 C 0.06 1.34 6.55 86.33 0.57 1.91 16 17 N -0.70 -19.49 6.85 -514.01 -3.52 -23.00 16 18 C 0.08 2.57 5.63 86.32 0.49 3.06 16 19 H 0.29 14.44 8.29 -92.71 -0.77 13.68 16 20 H 0.05 3.08 7.45 -2.91 -0.02 3.06 16 21 H 0.07 3.32 6.97 -2.91 -0.02 3.30 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.05 2.32 5.31 -2.39 -0.01 2.31 16 24 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.35 7.98 8.90 -89.69 -0.80 7.18 16 31 H 0.06 2.20 6.76 -2.39 -0.02 2.19 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -60.90 256.65 1.71 -59.19 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.29 Total: 20.68 kcal Atomic # 6 Polarization: -53.83 SS G_CDS: 2.63 Total: -51.20 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -3.24 Total: -70.99 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -60.90 1.71 -59.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260609194.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.081 kcal (2) G-P(sol) polarization free energy of solvation -60.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds