Wall clock time and date at job start Mon Mar 30 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47098 * 2 1 4 4 H 1.09003 * 109.46827 * 305.00188 * 3 2 1 5 5 C 1.50696 * 109.46905 * 185.00348 * 3 2 1 6 6 H 1.08001 * 119.99662 * 239.99516 * 5 3 2 7 7 C 1.37871 * 120.00208 * 59.99919 * 5 3 2 8 8 N 1.31518 * 120.00268 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99889 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47267 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46838 * 120.00016 * 9 7 5 12 12 H 1.48495 * 109.47223 * 240.00032 * 9 7 5 13 13 C 1.50703 * 109.47182 * 64.99817 * 3 2 1 14 14 N 1.31378 * 127.04264 * 59.95872 * 13 3 2 15 15 N 1.28606 * 108.71572 * 180.02562 * 14 13 3 16 16 H 0.96992 * 124.62068 * 180.26574 * 15 14 13 17 17 N 1.28604 * 110.75874 * 359.97438 * 15 14 13 18 18 C 1.31374 * 108.72028 * 0.02562 * 17 15 14 19 19 C 1.50698 * 127.04905 * 179.97438 * 18 17 15 20 20 H 1.08999 * 109.47165 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47029 * 300.00115 * 1 2 3 22 22 H 1.09001 * 109.47372 * 59.99989 * 1 2 3 23 23 H 1.09000 * 109.46754 * 240.00355 * 2 1 3 24 24 H 1.08993 * 109.46777 * 120.00064 * 2 1 3 25 25 H 0.97001 * 120.00140 * 179.97438 * 8 7 5 26 26 H 1.09004 * 109.47257 * 90.02797 * 19 18 17 27 27 H 1.09004 * 109.47511 * 210.02218 * 19 18 17 28 28 H 1.08994 * 109.47411 * 330.02460 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8812 -1.3819 10 1 6.5987 1.5462 -0.1943 11 1 6.4970 -0.5175 -1.4631 12 1 6.3989 1.6167 -2.6103 13 6 1.6413 2.1163 1.2877 14 7 1.9729 1.7539 2.5062 15 7 1.4408 2.5756 3.3403 16 1 1.5404 2.5247 4.3037 17 7 0.7637 3.4777 2.7225 18 6 0.8434 3.2538 1.4304 19 6 0.2047 4.0589 0.3283 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.8292 -0.0604 -2.9504 26 1 0.8881 4.8467 0.0109 27 1 -0.0158 3.4070 -0.5171 28 1 -0.7200 4.5055 0.6935 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260637533.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:55 Heat of formation + Delta-G solvation = 80.023514 kcal Electronic energy + Delta-G solvation = -12438.212776 eV Core-core repulsion = 10298.104596 eV Total energy + Delta-G solvation = -2140.108181 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.76876 -35.31430 -32.71952 -31.85265 -30.72906 -27.79082 -27.15478 -23.58437 -21.77486 -20.44723 -18.95167 -17.73263 -16.28997 -15.43957 -14.69703 -13.54273 -13.30252 -12.86119 -12.63532 -12.53506 -12.19287 -11.51594 -11.25761 -10.99173 -10.71092 -10.56216 -10.10879 -9.96669 -9.65754 -9.42579 -9.35707 -8.97999 -8.35100 -8.13136 -5.99367 -4.04297 2.55384 3.30985 3.32910 3.40027 3.46519 3.49544 4.46490 5.01593 5.30674 5.55464 6.02623 6.10031 6.15165 6.30807 6.33166 6.43708 6.58610 6.82174 6.95340 7.07414 7.26896 7.38552 7.72840 7.77094 7.94270 8.10622 8.39994 8.96337 9.11231 9.59062 11.06174 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.037903 B = 0.012602 C = 0.011411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.541107 B = 2221.340248 C = 2453.242732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.125 3.875 4 H 0.049 0.951 5 C -0.500 4.500 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.069 3.931 14 N -0.292 5.292 15 N -0.276 5.276 16 H 0.458 0.542 17 N -0.308 5.308 18 C -0.011 4.011 19 C -0.057 4.057 20 H 0.033 0.967 21 H 0.030 0.970 22 H 0.045 0.955 23 H 0.099 0.901 24 H 0.038 0.962 25 H 0.261 0.739 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 3.169 4.497 7.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.104 3.896 4 H 0.067 0.933 5 C -0.539 4.539 6 H 0.074 0.926 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.096 4.096 14 N -0.133 5.133 15 N -0.105 5.105 16 H 0.307 0.693 17 N -0.153 5.153 18 C -0.175 4.175 19 C -0.116 4.116 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.065 0.935 23 H 0.117 0.883 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.666 3.011 5.601 7.887 hybrid contribution 1.028 -0.007 -0.268 1.062 sum -3.638 3.004 5.333 7.120 Atomic orbital electron populations 1.21830 0.99392 0.99177 0.99790 1.21588 0.91452 0.99186 1.02909 1.17388 0.96042 0.91564 0.84572 0.93293 1.21068 0.90372 1.37343 1.05089 0.92592 1.24907 0.98114 0.95235 0.95630 1.69870 1.34688 1.38830 1.09512 0.86507 0.85762 0.77696 0.77892 1.19929 1.20994 1.21013 1.24023 0.95820 0.94890 0.94837 1.74098 1.19933 1.18160 1.01082 1.45635 1.36357 1.18238 1.10301 0.69320 1.73749 1.17498 1.16183 1.07823 1.23081 1.03583 0.99406 0.91429 1.19968 0.99180 0.98511 0.93969 0.94764 0.95106 0.93538 0.88266 0.94322 0.92944 0.90930 0.90075 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.73 37.16 0.36 -2.55 15 2 C -0.11 -2.69 5.23 -26.73 -0.14 -2.83 15 3 C 0.12 3.09 2.19 -92.92 -0.20 2.89 15 4 H 0.05 1.25 7.17 -51.93 -0.37 0.87 15 5 C -0.50 -13.72 8.55 -34.44 -0.29 -14.01 15 6 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 15 8 N -0.89 -24.57 11.30 55.43 0.63 -23.95 15 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 15 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 13 C 0.07 1.56 4.78 -82.25 -0.39 1.17 15 14 N -0.29 -6.38 12.31 33.71 0.42 -5.96 15 15 N -0.28 -5.01 7.79 60.35 0.47 -4.54 15 16 H 0.46 6.12 8.96 -339.91 -3.05 3.08 15 17 N -0.31 -5.87 12.31 33.71 0.42 -5.46 15 18 C -0.01 -0.22 7.35 -82.26 -0.60 -0.83 15 19 C -0.06 -0.92 10.20 36.00 0.37 -0.56 15 20 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.03 0.61 7.38 -51.93 -0.38 0.22 15 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.10 2.59 5.95 -51.93 -0.31 2.28 15 24 H 0.04 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.08 1.28 7.44 -51.93 -0.39 0.90 15 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 LS Contribution 241.54 15.07 3.64 3.64 Total: -1.00 -29.92 241.54 -6.61 -36.52 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.15 Total: -1.38 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -1.00 Total: -15.13 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 1.93 Total: -39.91 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.92 -6.61 -36.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637533.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.547 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds