Wall clock time and date at job start Mon Mar 30 2020 01:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47098 * 2 1 4 4 H 1.09003 * 109.46827 * 305.00188 * 3 2 1 5 5 C 1.50696 * 109.46905 * 185.00348 * 3 2 1 6 6 H 1.08001 * 119.99662 * 239.99516 * 5 3 2 7 7 C 1.37871 * 120.00208 * 59.99919 * 5 3 2 8 8 N 1.31518 * 120.00268 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99889 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47267 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46838 * 120.00016 * 9 7 5 12 12 H 1.48495 * 109.47223 * 240.00032 * 9 7 5 13 13 C 1.50703 * 109.47182 * 64.99817 * 3 2 1 14 14 N 1.31378 * 127.04264 * 59.95872 * 13 3 2 15 15 N 1.28606 * 108.71572 * 180.02562 * 14 13 3 16 16 H 0.96992 * 124.62068 * 180.26574 * 15 14 13 17 17 N 1.28604 * 110.75874 * 359.97438 * 15 14 13 18 18 C 1.31374 * 108.72028 * 0.02562 * 17 15 14 19 19 C 1.50698 * 127.04905 * 179.97438 * 18 17 15 20 20 H 1.08999 * 109.47165 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47029 * 300.00115 * 1 2 3 22 22 H 1.09001 * 109.47372 * 59.99989 * 1 2 3 23 23 H 1.09000 * 109.46754 * 240.00355 * 2 1 3 24 24 H 1.08993 * 109.46777 * 120.00064 * 2 1 3 25 25 H 0.97001 * 120.00140 * 179.97438 * 8 7 5 26 26 H 1.09004 * 109.47257 * 90.02797 * 19 18 17 27 27 H 1.09004 * 109.47511 * 210.02218 * 19 18 17 28 28 H 1.08994 * 109.47411 * 330.02460 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8812 -1.3819 10 1 6.5987 1.5462 -0.1943 11 1 6.4970 -0.5175 -1.4631 12 1 6.3989 1.6167 -2.6103 13 6 1.6413 2.1163 1.2877 14 7 1.9729 1.7539 2.5062 15 7 1.4408 2.5756 3.3403 16 1 1.5404 2.5247 4.3037 17 7 0.7637 3.4777 2.7225 18 6 0.8434 3.2538 1.4304 19 6 0.2047 4.0589 0.3283 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.8292 -0.0604 -2.9504 26 1 0.8881 4.8467 0.0109 27 1 -0.0158 3.4070 -0.5171 28 1 -0.7200 4.5055 0.6935 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260637533.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:54 Heat of formation + Delta-G solvation = 60.223528 kcal Electronic energy + Delta-G solvation = -12439.071368 eV Core-core repulsion = 10298.104596 eV Total energy + Delta-G solvation = -2140.966772 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.34998 -37.17544 -34.29194 -33.75042 -32.41787 -29.41101 -28.81948 -25.52914 -23.49840 -21.97289 -20.77272 -19.29423 -18.29886 -17.07337 -16.66477 -15.36820 -14.78011 -14.70418 -14.27683 -13.81218 -13.70011 -13.30033 -13.10951 -12.82329 -12.55346 -12.26982 -11.95767 -11.63018 -11.52989 -11.24246 -11.14069 -10.73417 -10.39898 -9.77921 -8.06127 -6.17694 0.99081 1.42253 1.44606 1.54597 1.68492 2.13954 2.47913 3.20702 3.46685 4.05698 4.46515 4.59837 4.66272 4.77382 4.84389 4.89029 5.09621 5.17497 5.29591 5.41886 5.48761 5.56039 5.69915 5.97166 6.10094 6.39528 6.40287 6.85738 7.47885 7.50845 8.98025 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.037903 B = 0.012602 C = 0.011411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.541107 B = 2221.340248 C = 2453.242732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 C 0.128 3.872 4 H 0.038 0.962 5 C -0.520 4.520 6 H 0.037 0.963 7 C 0.022 3.978 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.275 1.275 13 C 0.041 3.959 14 N -0.311 5.311 15 N -0.255 5.255 16 H 0.476 0.524 17 N -0.300 5.300 18 C -0.017 4.017 19 C -0.058 4.058 20 H 0.052 0.948 21 H 0.032 0.968 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.264 0.736 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 3.719 4.842 8.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.559 4.559 6 H 0.055 0.945 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.776 3.224 10 H -0.204 1.204 11 H -0.205 1.205 12 H -0.201 1.201 13 C -0.123 4.123 14 N -0.153 5.153 15 N -0.089 5.089 16 H 0.330 0.670 17 N -0.145 5.145 18 C -0.180 4.180 19 C -0.116 4.116 20 H 0.071 0.929 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.093 0.907 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.108 3.564 5.954 8.617 hybrid contribution 1.160 -0.168 -0.301 1.211 sum -3.948 3.396 5.653 7.686 Atomic orbital electron populations 1.21678 0.96451 1.00562 1.00242 1.21423 0.94048 0.98295 1.00751 1.17173 0.94492 0.92038 0.85549 0.94445 1.21245 0.92013 1.37711 1.04885 0.94466 1.25537 1.01866 0.94911 0.95374 1.69958 1.36058 1.38940 1.09741 0.85639 0.81225 0.77782 0.77770 1.20396 1.20476 1.20065 1.23745 0.97711 0.96442 0.94353 1.73998 1.20525 1.19253 1.01516 1.45727 1.34988 1.17107 1.11055 0.67049 1.73756 1.17316 1.15991 1.07461 1.23563 1.03126 0.98863 0.92462 1.20109 1.00316 0.98342 0.92880 0.92916 0.94857 0.92754 0.90750 0.95915 0.92681 0.90062 0.90110 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.73 71.98 0.70 -4.47 15 2 C -0.11 -5.10 5.23 30.60 0.16 -4.94 15 3 C 0.13 6.38 2.19 -12.29 -0.03 6.35 15 4 H 0.04 1.93 7.17 -2.39 -0.02 1.91 15 5 C -0.52 -28.91 8.55 25.60 0.22 -28.69 15 6 H 0.04 2.15 7.74 -2.91 -0.02 2.13 15 7 C 0.02 1.23 5.29 84.65 0.45 1.67 15 8 N -0.91 -50.32 11.30 21.45 0.24 -50.08 15 9 Si 0.95 43.70 29.54 68.60 2.03 45.72 15 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 15 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 12 H -0.28 -12.20 7.11 99.48 0.71 -11.50 15 13 C 0.04 1.84 4.78 42.97 0.21 2.04 15 14 N -0.31 -13.35 12.31 -47.25 -0.58 -13.94 15 15 N -0.26 -8.83 7.79 37.02 0.29 -8.54 15 16 H 0.48 11.78 8.96 -347.15 -3.11 8.67 15 17 N -0.30 -10.82 12.31 -47.25 -0.58 -11.40 15 18 C -0.02 -0.66 7.35 42.97 0.32 -0.34 15 19 C -0.06 -1.75 10.20 71.24 0.73 -1.02 15 20 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 21 H 0.03 1.27 7.38 -2.39 -0.02 1.25 15 22 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.07 3.93 5.95 -2.39 -0.01 3.92 15 24 H 0.02 1.11 8.14 -2.39 -0.02 1.09 15 25 H 0.26 13.85 8.31 -92.71 -0.77 13.08 15 26 H 0.08 2.31 8.14 -2.38 -0.02 2.29 15 27 H 0.08 2.44 7.44 -2.39 -0.02 2.42 15 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 Total: -1.00 -62.59 241.54 2.19 -60.40 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -1.95 Total: 7.22 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 2.75 Total: -29.39 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -0.63 Total: -83.95 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -62.59 2.19 -60.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637533.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.624 kcal (2) G-P(sol) polarization free energy of solvation -62.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds