Wall clock time and date at job start Mon Mar 30 2020 02:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34948 * 126.03875 * 2 1 4 4 C 1.35319 * 107.74240 * 180.02562 * 3 2 1 5 5 C 1.39863 * 107.92318 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.89985 * 180.02562 * 5 4 3 7 7 H 1.09009 * 109.47161 * 5.00449 * 6 5 4 8 8 N 1.46899 * 109.47601 * 245.00791 * 6 5 4 9 9 C 1.52996 * 109.47144 * 125.00172 * 6 5 4 10 10 C 1.50702 * 109.47159 * 185.00130 * 9 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 N 1.30841 * 108.20435 * 0.26921 * 5 4 3 19 19 H 1.09001 * 109.47215 * 89.99913 * 1 2 3 20 20 H 1.09007 * 109.47293 * 210.00254 * 1 2 3 21 21 H 1.09003 * 109.46916 * 330.00206 * 1 2 3 22 22 H 1.07998 * 126.12910 * 359.96219 * 3 2 1 23 23 H 1.08002 * 126.03626 * 180.02562 * 4 3 2 24 24 H 1.00901 * 110.99243 * 299.99615 * 8 6 5 25 25 H 1.00899 * 111.00294 * 63.95163 * 8 6 5 26 26 H 1.09004 * 109.47066 * 65.00333 * 9 6 5 27 27 H 1.08994 * 109.47405 * 305.00163 * 9 6 5 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6664 -0.0006 5 6 3.5346 -0.7322 -0.0003 6 6 4.7496 -1.6238 -0.0003 7 1 5.6482 -1.0133 0.0892 8 7 4.7982 -2.3855 -1.2554 9 6 4.6713 -2.5924 1.1815 10 6 5.9415 -3.4000 1.2541 11 1 6.7264 -3.2383 0.5300 12 6 6.1043 -4.3410 2.2486 13 7 5.1487 -4.5376 3.1306 14 14 7.6820 -5.3366 2.3432 15 1 8.6657 -4.6253 3.1985 16 1 7.3913 -6.6705 2.9276 17 1 8.2433 -5.5056 0.9788 18 7 2.2891 -1.1328 -0.0055 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.9282 2.1193 -0.0006 23 1 4.4211 1.2961 -0.0003 24 1 3.9754 -2.9599 -1.3618 25 1 4.9150 -1.7710 -2.0471 26 1 3.8220 -3.2623 1.0465 27 1 4.5459 -2.0285 2.1058 28 1 5.2631 -5.1999 3.8300 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639623.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:37 Heat of formation + Delta-G solvation = 45.191368 kcal Electronic energy + Delta-G solvation = -11923.111630 eV Core-core repulsion = 9781.493015 eV Total energy + Delta-G solvation = -2141.618616 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.05191 -37.24282 -34.63647 -33.32588 -30.91249 -30.22347 -27.89853 -25.79736 -23.08288 -21.93724 -20.17828 -18.50207 -17.70664 -16.81911 -16.43334 -16.17762 -15.45280 -14.76311 -14.48645 -14.36007 -13.77175 -13.48301 -13.26703 -13.10433 -12.71634 -12.45313 -12.25087 -11.69400 -11.32586 -11.19575 -10.50722 -10.19028 -9.57053 -9.36785 -8.10385 -6.17840 1.01294 1.43600 1.46083 1.58053 1.76466 1.88079 2.49074 3.22508 3.66349 3.94535 4.02143 4.23623 4.41504 4.44049 4.66665 4.81257 4.93391 4.97262 5.14957 5.45301 5.63543 5.72930 5.87958 6.26375 6.27355 6.44785 6.73821 6.88943 6.97040 7.48938 9.02420 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.062381 B = 0.008221 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.747623 B = 3404.966090 C = 3589.617144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.387 5.387 3 C 0.063 3.937 4 C -0.293 4.293 5 C 0.029 3.971 6 C 0.184 3.816 7 H 0.089 0.911 8 N -0.819 5.819 9 C 0.051 3.949 10 C -0.507 4.507 11 H 0.066 0.934 12 C -0.009 4.009 13 N -0.944 5.944 14 Si 0.968 3.032 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.264 1.264 18 N -0.335 5.335 19 H 0.089 0.911 20 H 0.076 0.924 21 H 0.121 0.879 22 H 0.222 0.778 23 H 0.161 0.839 24 H 0.335 0.665 25 H 0.340 0.660 26 H -0.015 1.015 27 H -0.017 1.017 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.458 12.602 -7.503 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.170 5.170 3 C -0.084 4.084 4 C -0.322 4.322 5 C -0.139 4.139 6 C 0.070 3.930 7 H 0.107 0.893 8 N -0.346 5.346 9 C 0.013 3.987 10 C -0.546 4.546 11 H 0.084 0.916 12 C -0.205 4.205 13 N -0.585 5.585 14 Si 0.793 3.207 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.188 1.188 18 N -0.159 5.159 19 H 0.107 0.893 20 H 0.095 0.905 21 H 0.140 0.860 22 H 0.238 0.762 23 H 0.178 0.822 24 H 0.148 0.852 25 H 0.153 0.847 26 H 0.004 0.996 27 H 0.001 0.999 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.803 11.156 -7.076 15.343 hybrid contribution 0.112 0.466 0.234 0.533 sum -7.690 11.622 -6.842 15.525 Atomic orbital electron populations 1.22164 0.72233 1.05628 1.04555 1.49023 1.07989 1.03560 1.56396 1.23180 0.90287 0.94796 1.00098 1.21788 0.98849 0.93533 1.18066 1.23844 0.94446 0.96168 0.99399 1.19927 0.90312 0.91208 0.91545 0.89299 1.58818 1.46571 1.26083 1.03176 1.18832 0.95853 0.92879 0.91147 1.21532 1.02313 1.19166 1.11540 0.91553 1.26002 1.00250 0.98761 0.95485 1.70148 1.35145 1.35829 1.17426 0.85404 0.79227 0.77523 0.78581 1.19751 1.21227 1.18774 1.77310 1.02394 1.09724 1.26450 0.89282 0.90502 0.86040 0.76158 0.82160 0.85243 0.84699 0.99644 0.99905 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.70 11.47 127.77 1.47 3.16 15 2 N -0.39 -11.40 4.01 -369.55 -1.48 -12.88 15 3 C 0.06 1.57 11.49 83.54 0.96 2.53 15 4 C -0.29 -9.26 10.72 21.99 0.24 -9.03 15 5 C 0.03 1.17 6.03 43.10 0.26 1.43 15 6 C 0.18 8.25 3.19 44.17 0.14 8.39 15 7 H 0.09 3.85 8.12 -2.38 -0.02 3.83 15 8 N -0.82 -33.42 8.94 -171.80 -1.54 -34.95 15 9 C 0.05 2.90 4.58 29.85 0.14 3.04 15 10 C -0.51 -30.37 8.84 25.60 0.23 -30.15 15 11 H 0.07 3.85 7.74 -2.91 -0.02 3.83 15 12 C -0.01 -0.56 5.46 84.66 0.46 -0.09 15 13 N -0.94 -60.84 13.29 21.45 0.28 -60.56 15 14 Si 0.97 46.82 29.54 68.60 2.03 48.84 15 15 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 16 H -0.29 -13.61 7.11 99.48 0.71 -12.90 15 17 H -0.26 -12.24 7.11 99.48 0.71 -11.53 15 18 N -0.33 -13.64 12.55 -47.39 -0.59 -14.24 15 19 H 0.09 1.26 8.14 -2.39 -0.02 1.24 15 20 H 0.08 1.56 8.14 -2.38 -0.02 1.54 15 21 H 0.12 1.24 8.14 -2.39 -0.02 1.22 15 22 H 0.22 2.89 8.06 -2.91 -0.02 2.87 15 23 H 0.16 4.30 8.06 -2.91 -0.02 4.28 15 24 H 0.34 14.10 8.99 -89.69 -0.81 13.30 15 25 H 0.34 11.44 9.06 -89.69 -0.81 10.63 15 26 H -0.01 -0.94 8.14 -2.38 -0.02 -0.96 15 27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 15 28 H 0.26 15.72 8.31 -92.70 -0.77 14.95 15 Total: -1.00 -77.35 250.47 2.13 -75.22 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -0.45 Total: 19.29 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.89 Total: -20.72 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -3.33 Total: -122.63 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -77.35 2.13 -75.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639623.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.409 kcal (2) G-P(sol) polarization free energy of solvation -77.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds