Wall clock time and date at job start Mon Mar 30 2020 02:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00460 * 2 1 4 4 H 1.48503 * 109.47481 * 270.00112 * 3 2 1 5 5 H 1.48504 * 109.47225 * 30.00090 * 3 2 1 6 6 H 1.48506 * 109.47135 * 149.99981 * 3 2 1 7 7 C 1.37878 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00208 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99894 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47246 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.47276 * 305.00217 * 10 9 7 12 12 C 1.53006 * 109.46912 * 65.00020 * 10 9 7 13 13 C 1.53003 * 117.49666 * 253.93948 * 12 10 9 14 14 C 1.53003 * 117.49515 * 185.28108 * 12 10 9 15 15 C 1.53003 * 109.47148 * 184.99764 * 10 9 7 16 16 C 1.53510 * 114.17028 * 60.23852 * 15 10 9 17 17 N 1.47476 * 87.93393 * 220.32879 * 16 15 10 18 18 C 1.47482 * 87.83525 * 27.01326 * 17 16 15 19 19 H 0.97004 * 119.99445 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47467 * 59.99676 * 9 7 2 21 21 H 1.09000 * 109.46993 * 299.99692 * 9 7 2 22 22 H 1.08995 * 115.55179 * 39.60747 * 12 10 9 23 23 H 1.09004 * 117.49844 * 0.02562 * 13 12 10 24 24 H 1.08992 * 117.49823 * 145.02472 * 13 12 10 25 25 H 1.08998 * 117.49487 * 214.97614 * 14 12 10 26 26 H 1.08992 * 117.50144 * 359.97438 * 14 12 10 27 27 H 1.08996 * 113.37941 * 193.32287 * 15 10 9 28 28 H 1.08997 * 113.47334 * 105.56185 * 16 15 10 29 29 H 1.09002 * 113.52861 * 335.10623 * 16 15 10 30 30 H 1.00900 * 110.99844 * 138.70196 * 17 16 15 31 31 H 1.09000 * 113.47979 * 87.75782 * 18 17 16 32 32 H 1.09000 * 113.47555 * 218.22508 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1943 0.0000 10 6 4.0213 -2.6368 -0.0001 11 1 3.5864 -3.1760 0.8414 12 6 3.6170 -3.3205 -1.3078 13 6 2.4835 -4.3464 -1.2475 14 6 3.9276 -4.8119 -1.4506 15 6 5.5462 -2.6387 0.1262 16 6 6.0714 -1.9802 1.4095 17 7 7.1461 -1.3794 0.5977 18 6 6.2352 -1.4508 -0.5599 19 1 -0.4849 0.8401 0.0004 20 1 3.8745 -0.6810 0.8905 21 1 3.8751 -0.6799 -0.8895 22 1 3.6900 -2.7032 -2.2031 23 1 2.0255 -4.5339 -0.2762 24 1 1.8111 -4.4043 -2.1033 25 1 4.2045 -5.1757 -2.4400 26 1 4.4202 -5.3058 -0.6132 27 1 5.9973 -3.6057 -0.0963 28 1 6.4333 -2.6957 2.1479 29 1 5.3861 -1.2466 1.8341 30 1 7.3118 -0.4218 0.8689 31 1 5.5930 -0.5760 -0.6618 32 1 6.7358 -1.7176 -1.4906 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260667141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:46 Heat of formation + Delta-G solvation = 47.572847 kcal Electronic energy + Delta-G solvation = -12679.292706 eV Core-core repulsion = 10641.317703 eV Total energy + Delta-G solvation = -2037.975004 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73803 -36.71121 -33.11956 -31.20594 -27.57555 -25.49029 -24.24432 -21.89933 -21.63269 -20.02020 -17.94452 -17.05404 -15.66602 -15.37415 -14.60975 -14.36415 -13.96298 -12.98518 -12.62074 -12.43257 -11.96685 -11.77282 -11.49096 -11.02351 -10.97034 -10.57278 -10.38810 -10.08528 -9.77574 -9.61300 -9.54734 -9.14436 -8.90391 -8.58596 -8.52501 -6.03011 -3.99217 3.27224 3.35625 3.35760 4.43380 4.45107 4.61741 4.85561 5.23848 5.29086 5.44896 5.59750 5.62831 5.74750 5.81512 6.03172 6.03976 6.10642 6.12732 6.25926 6.31465 6.43306 6.50972 6.60013 6.69634 6.91316 6.96709 7.24402 7.38884 7.49890 7.80598 8.57748 9.05792 9.59993 11.10594 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.015109 C = 0.010550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.646492 B = 1852.703837 C = 2653.427607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.874 3.126 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.510 4.510 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.036 4.036 11 H 0.067 0.933 12 C -0.110 4.110 13 C -0.167 4.167 14 C -0.201 4.201 15 C -0.105 4.105 16 C 0.000 4.000 17 N -0.637 5.637 18 C -0.002 4.002 19 H 0.261 0.739 20 H 0.014 0.986 21 H 0.014 0.986 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.312 0.688 31 H 0.079 0.921 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.731 -4.235 -0.638 10.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.702 3.298 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.548 4.548 8 H 0.096 0.904 9 C -0.045 4.045 10 C -0.055 4.055 11 H 0.085 0.915 12 C -0.128 4.128 13 C -0.204 4.204 14 C -0.238 4.238 15 C -0.124 4.124 16 C -0.130 4.130 17 N -0.260 5.260 18 C -0.132 4.132 19 H 0.071 0.929 20 H 0.032 0.968 21 H 0.032 0.968 22 H 0.114 0.886 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.229 -4.706 -0.739 11.284 hybrid contribution -0.429 1.722 0.077 1.776 sum 9.801 -2.984 -0.663 10.267 Atomic orbital electron populations 1.69910 1.06203 1.26635 1.51616 1.25018 0.94663 0.98861 0.94977 0.86877 0.80277 0.84260 0.78381 1.20404 1.21483 1.19394 1.21172 0.89313 0.94526 1.49759 0.90426 1.19749 0.97399 0.91492 0.95842 1.20572 0.91183 0.98666 0.95111 0.91468 1.22040 1.01772 0.89522 0.99446 1.22827 0.90698 1.04217 1.02621 1.22974 1.00072 0.99204 1.01570 1.22810 0.96407 0.97796 0.95351 1.23709 0.93033 0.99275 0.97021 1.67289 1.31655 1.21515 1.05537 1.23820 0.94237 0.99605 0.95577 0.92881 0.96777 0.96774 0.88573 0.89113 0.89651 0.89949 0.89646 0.89078 0.90738 0.90863 0.87633 0.90310 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.51 -13.92 9.16 -34.44 -0.32 -14.24 16 8 H 0.08 2.28 7.23 -52.49 -0.38 1.90 16 9 C -0.01 -0.18 2.30 -27.88 -0.06 -0.24 16 10 C -0.04 -0.69 2.03 -90.61 -0.18 -0.87 16 11 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 12 C -0.11 -1.98 4.48 -90.61 -0.41 -2.39 16 13 C -0.17 -2.93 9.52 -26.69 -0.25 -3.18 16 14 C -0.20 -3.06 9.73 -26.69 -0.26 -3.32 16 15 C -0.10 -1.71 3.86 -90.09 -0.35 -2.06 16 16 C 0.00 0.00 8.03 -7.55 -0.06 -0.06 16 17 N -0.64 -9.71 8.71 -122.66 -1.07 -10.78 16 18 C 0.00 -0.04 7.85 -7.55 -0.06 -0.10 16 19 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 20 H 0.01 0.32 5.41 -51.93 -0.28 0.04 16 21 H 0.01 0.32 5.96 -51.93 -0.31 0.01 16 22 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 23 H 0.09 1.65 8.08 -51.93 -0.42 1.23 16 24 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 27 H 0.09 1.41 7.67 -51.93 -0.40 1.01 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.22 6.39 -51.93 -0.33 0.89 16 30 H 0.31 4.35 8.91 -39.29 -0.35 4.00 16 31 H 0.08 1.37 5.56 -51.93 -0.29 1.08 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 253.58 15.07 3.82 3.82 Total: -1.00 -29.01 253.58 -8.06 -37.07 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.87 Total: 4.63 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -2.05 Total: -24.69 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.30 Total: -37.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.01 -8.06 -37.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260667141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.645 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds