Wall clock time and date at job start Mon Mar 30 2020 02:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00460 * 2 1 4 4 H 1.48503 * 109.47481 * 270.00112 * 3 2 1 5 5 H 1.48504 * 109.47225 * 30.00090 * 3 2 1 6 6 H 1.48506 * 109.47135 * 149.99981 * 3 2 1 7 7 C 1.37878 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00208 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99894 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47246 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.47276 * 305.00217 * 10 9 7 12 12 C 1.53006 * 109.46912 * 65.00020 * 10 9 7 13 13 C 1.53003 * 117.49666 * 253.93948 * 12 10 9 14 14 C 1.53003 * 117.49515 * 185.28108 * 12 10 9 15 15 C 1.53003 * 109.47148 * 184.99764 * 10 9 7 16 16 C 1.53510 * 114.17028 * 60.23852 * 15 10 9 17 17 N 1.47476 * 87.93393 * 220.32879 * 16 15 10 18 18 C 1.47482 * 87.83525 * 27.01326 * 17 16 15 19 19 H 0.97004 * 119.99445 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47467 * 59.99676 * 9 7 2 21 21 H 1.09000 * 109.46993 * 299.99692 * 9 7 2 22 22 H 1.08995 * 115.55179 * 39.60747 * 12 10 9 23 23 H 1.09004 * 117.49844 * 0.02562 * 13 12 10 24 24 H 1.08992 * 117.49823 * 145.02472 * 13 12 10 25 25 H 1.08998 * 117.49487 * 214.97614 * 14 12 10 26 26 H 1.08992 * 117.50144 * 359.97438 * 14 12 10 27 27 H 1.08996 * 113.37941 * 193.32287 * 15 10 9 28 28 H 1.08997 * 113.47334 * 105.56185 * 16 15 10 29 29 H 1.09002 * 113.52861 * 335.10623 * 16 15 10 30 30 H 1.00900 * 110.99844 * 138.70196 * 17 16 15 31 31 H 1.09000 * 113.47979 * 87.75782 * 18 17 16 32 32 H 1.09000 * 113.47555 * 218.22508 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1943 0.0000 10 6 4.0213 -2.6368 -0.0001 11 1 3.5864 -3.1760 0.8414 12 6 3.6170 -3.3205 -1.3078 13 6 2.4835 -4.3464 -1.2475 14 6 3.9276 -4.8119 -1.4506 15 6 5.5462 -2.6387 0.1262 16 6 6.0714 -1.9802 1.4095 17 7 7.1461 -1.3794 0.5977 18 6 6.2352 -1.4508 -0.5599 19 1 -0.4849 0.8401 0.0004 20 1 3.8745 -0.6810 0.8905 21 1 3.8751 -0.6799 -0.8895 22 1 3.6900 -2.7032 -2.2031 23 1 2.0255 -4.5339 -0.2762 24 1 1.8111 -4.4043 -2.1033 25 1 4.2045 -5.1757 -2.4400 26 1 4.4202 -5.3058 -0.6132 27 1 5.9973 -3.6057 -0.0963 28 1 6.4333 -2.6957 2.1479 29 1 5.3861 -1.2466 1.8341 30 1 7.3118 -0.4218 0.8689 31 1 5.5930 -0.5760 -0.6618 32 1 6.7358 -1.7176 -1.4906 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260667141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:45 Heat of formation + Delta-G solvation = 27.865032 kcal Electronic energy + Delta-G solvation = -12680.147301 eV Core-core repulsion = 10641.317703 eV Total energy + Delta-G solvation = -2038.829599 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.05839 -38.07918 -35.10206 -32.98888 -29.26959 -26.73459 -25.78694 -23.62282 -23.04410 -21.40578 -19.38697 -19.01037 -17.12288 -16.80370 -16.09788 -15.88284 -15.67578 -14.66494 -14.26731 -13.88690 -13.65109 -13.32252 -13.01374 -12.68644 -12.31852 -12.18015 -11.93914 -11.67709 -11.53559 -11.40274 -10.98242 -10.71193 -10.65181 -10.48037 -9.85741 -8.22850 -6.23232 1.33644 1.34987 1.44813 2.37318 3.07720 3.14350 3.38543 3.54330 3.94392 4.09707 4.20092 4.28279 4.47117 4.54167 4.59598 4.78982 4.84397 4.88064 4.89527 4.91269 5.05805 5.11045 5.14301 5.32690 5.37510 5.45009 5.60900 5.68458 5.74300 6.32712 6.40970 6.86163 7.39403 8.93952 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.015109 C = 0.010550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.646492 B = 1852.703837 C = 2653.427607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.248 1.248 7 C -0.510 4.510 8 H 0.042 0.958 9 C -0.002 4.002 10 C -0.029 4.029 11 H 0.053 0.947 12 C -0.131 4.131 13 C -0.188 4.188 14 C -0.160 4.160 15 C -0.099 4.099 16 C 0.000 4.000 17 N -0.632 5.632 18 C -0.002 4.002 19 H 0.262 0.738 20 H 0.016 0.984 21 H 0.019 0.981 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.322 0.678 31 H 0.064 0.936 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.322 -4.341 -0.853 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.194 4.194 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.171 1.171 7 C -0.548 4.548 8 H 0.061 0.939 9 C -0.039 4.039 10 C -0.048 4.048 11 H 0.071 0.929 12 C -0.149 4.149 13 C -0.225 4.225 14 C -0.197 4.197 15 C -0.118 4.118 16 C -0.130 4.130 17 N -0.256 5.256 18 C -0.132 4.132 19 H 0.071 0.929 20 H 0.034 0.966 21 H 0.037 0.963 22 H 0.105 0.895 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.847 -4.823 -0.951 13.755 hybrid contribution -1.288 1.677 0.147 2.119 sum 11.559 -3.146 -0.805 12.007 Atomic orbital electron populations 1.70073 1.08175 1.27600 1.53797 1.25921 0.95441 1.02998 0.95012 0.85819 0.79606 0.79275 0.78896 1.19546 1.21596 1.17129 1.21518 0.91943 0.93122 1.48193 0.93935 1.19673 0.94023 0.94308 0.95865 1.20396 0.93255 0.96038 0.95116 0.92892 1.22014 1.03035 0.91219 0.98663 1.22828 0.92167 1.05668 1.01873 1.23032 0.97079 0.96202 1.03398 1.22756 0.94035 0.98889 0.96091 1.23687 0.92946 0.99250 0.97129 1.67280 1.30964 1.22297 1.05018 1.23766 0.94249 0.98713 0.96459 0.92942 0.96634 0.96282 0.89457 0.90641 0.89861 0.87612 0.88088 0.87411 0.89168 0.92183 0.86598 0.91794 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.00 0.11 5.47 84.66 0.46 0.58 16 3 Si 0.94 43.97 27.47 68.60 1.88 45.85 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.51 -28.40 9.16 25.60 0.23 -28.17 16 8 H 0.04 2.61 7.23 -2.91 -0.02 2.58 16 9 C 0.00 -0.07 2.30 29.85 0.07 -0.01 16 10 C -0.03 -1.07 2.03 -10.79 -0.02 -1.09 16 11 H 0.05 2.08 7.94 -2.39 -0.02 2.06 16 12 C -0.13 -4.62 4.48 -10.79 -0.05 -4.66 16 13 C -0.19 -6.61 9.52 30.62 0.29 -6.32 16 14 C -0.16 -4.44 9.73 30.62 0.30 -4.14 16 15 C -0.10 -2.96 3.86 -10.45 -0.04 -3.00 16 16 C 0.00 0.00 8.03 83.57 0.67 0.67 16 17 N -0.63 -17.23 8.71 -541.99 -4.72 -21.95 16 18 C 0.00 -0.05 7.85 83.57 0.66 0.60 16 19 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 20 H 0.02 0.69 5.41 -2.39 -0.01 0.68 16 21 H 0.02 0.84 5.96 -2.39 -0.01 0.82 16 22 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 23 H 0.07 2.84 8.08 -2.38 -0.02 2.82 16 24 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 25 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.10 2.52 8.08 -2.39 -0.02 2.50 16 27 H 0.11 2.92 7.67 -2.39 -0.02 2.90 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 1.88 6.39 -2.39 -0.02 1.86 16 30 H 0.32 7.97 8.91 -89.69 -0.80 7.18 16 31 H 0.06 2.06 5.56 -2.39 -0.01 2.05 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -62.54 253.58 0.28 -62.26 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.25 Total: 18.92 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 2.57 Total: -45.53 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -4.42 Total: -81.51 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Total: -62.54 0.28 -62.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260667141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.126 kcal (2) G-P(sol) polarization free energy of solvation -62.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds