Wall clock time and date at job start Mon Mar 30 2020 03:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00273 * 2 1 4 4 H 1.48502 * 109.46976 * 89.99839 * 3 2 1 5 5 H 1.48495 * 109.47018 * 209.99746 * 3 2 1 6 6 H 1.48499 * 109.46989 * 330.00241 * 3 2 1 7 7 C 1.37875 * 119.99293 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99239 * 186.44279 * 7 2 1 9 9 C 1.50700 * 120.00712 * 6.44306 * 7 2 1 10 10 H 1.09006 * 109.46763 * 5.12040 * 9 7 2 11 11 C 1.52998 * 109.47005 * 125.11295 * 9 7 2 12 12 C 1.52998 * 117.50092 * 2.89299 * 11 9 7 13 13 C 1.53001 * 117.50183 * 294.23297 * 11 9 7 14 14 N 1.46896 * 109.47258 * 245.11568 * 9 7 2 15 15 C 1.48529 * 111.00182 * 302.60237 * 14 9 7 16 16 C 1.54936 * 103.22389 * 159.72169 * 15 14 9 17 17 C 1.54591 * 102.92407 * 322.58350 * 16 15 14 18 18 C 1.47900 * 110.99827 * 60.00083 * 14 9 7 19 19 H 0.96993 * 120.00303 * 175.13488 * 1 2 3 20 20 H 1.09002 * 115.54911 * 148.55756 * 11 9 7 21 21 H 1.09002 * 117.50104 * 359.97438 * 12 11 9 22 22 H 1.09004 * 117.49939 * 145.01819 * 12 11 9 23 23 H 1.09002 * 117.49431 * 214.97824 * 13 11 9 24 24 H 1.08994 * 117.49898 * 0.02562 * 13 11 9 25 25 H 1.09001 * 110.66598 * 278.15564 * 15 14 9 26 26 H 1.08994 * 110.66480 * 41.28846 * 15 14 9 27 27 H 1.08999 * 110.72312 * 204.22777 * 16 15 14 28 28 H 1.08998 * 110.72880 * 80.94631 * 16 15 14 29 29 H 1.08995 * 110.31120 * 263.04223 * 17 16 15 30 30 H 1.09002 * 110.31077 * 140.87712 * 17 16 15 31 31 H 1.09000 * 109.91798 * 333.50823 * 18 14 9 32 32 H 1.09004 * 109.91903 * 94.60211 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0793 -1.1970 0.1055 9 6 1.2580 -2.4952 -0.1453 10 1 0.2033 -2.2903 -0.3293 11 6 1.8364 -3.2859 -1.3205 12 6 3.0412 -2.6879 -2.0497 13 6 1.6658 -2.6954 -2.7216 14 7 1.3965 -3.2801 1.0886 15 6 2.8266 -3.5257 1.4056 16 6 2.8017 -3.8627 2.9176 17 6 1.7161 -2.9089 3.4666 18 6 0.8467 -2.5455 2.2485 19 1 -0.4850 -0.8369 -0.0712 20 1 1.7949 -4.3708 -1.2230 21 1 3.4215 -1.7308 -1.6926 22 1 3.7920 -3.3793 -2.4324 23 1 1.5124 -3.3919 -3.5460 24 1 1.1419 -1.7434 -2.8062 25 1 3.2090 -4.3686 0.8298 26 1 3.4208 -2.6309 1.2206 27 1 3.7679 -3.6517 3.3758 28 1 2.5173 -4.9029 3.0764 29 1 2.1755 -2.0131 3.8842 30 1 1.1154 -3.4145 4.2228 31 1 0.8948 -1.4722 2.0650 32 1 -0.1863 -2.8463 2.4229 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260778527.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:55 Heat of formation + Delta-G solvation = 25.194762 kcal Electronic energy + Delta-G solvation = -13082.072510 eV Core-core repulsion = 11043.127119 eV Total energy + Delta-G solvation = -2038.945390 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.37966 -35.93780 -32.87061 -30.39197 -27.88909 -25.59327 -23.71719 -21.41817 -20.53449 -19.79341 -19.22028 -16.29659 -15.32159 -14.93026 -14.24186 -13.79167 -13.41987 -13.14385 -12.84280 -11.67157 -11.46075 -11.26004 -10.83961 -10.69415 -10.48814 -10.40755 -10.28494 -10.21058 -9.82885 -9.73060 -9.29714 -9.14057 -8.57380 -8.45666 -7.00307 -6.38254 -4.14118 3.36968 3.40668 3.55618 4.44432 4.84585 5.14687 5.37168 5.51079 5.55170 5.69326 5.93246 6.05611 6.18830 6.24658 6.27486 6.47337 6.47697 6.50838 6.58647 6.70836 6.85022 6.96518 7.00095 7.07458 7.22335 7.23475 7.42064 8.04728 8.08604 8.39583 8.52130 8.80511 9.58184 10.94680 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.026375 B = 0.018224 C = 0.013192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.344837 B = 1536.055169 C = 2121.968169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.030 3.970 3 Si 1.060 2.940 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.608 4.608 8 H 0.054 0.946 9 C 0.198 3.802 10 H 0.057 0.943 11 C -0.126 4.126 12 C -0.176 4.176 13 C -0.181 4.181 14 N -0.521 5.521 15 C 0.045 3.955 16 C -0.124 4.124 17 C -0.125 4.125 18 C 0.041 3.959 19 H 0.272 0.728 20 H 0.079 0.921 21 H 0.109 0.891 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.314 -4.324 1.742 6.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.176 4.176 3 Si 0.889 3.111 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.648 4.648 8 H 0.072 0.928 9 C 0.092 3.908 10 H 0.075 0.925 11 C -0.146 4.146 12 C -0.212 4.212 13 C -0.219 4.219 14 N -0.245 5.245 15 C -0.084 4.084 16 C -0.162 4.162 17 C -0.163 4.163 18 C -0.088 4.088 19 H 0.085 0.915 20 H 0.097 0.903 21 H 0.127 0.873 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.801 -3.172 1.702 5.235 hybrid contribution 0.655 -0.888 -0.030 1.103 sum 4.455 -4.059 1.672 6.255 Atomic orbital electron populations 1.70820 1.06804 1.31173 1.45628 1.25756 0.96454 1.02378 0.93037 0.83663 0.74957 0.75646 0.76814 1.21545 1.21416 1.20983 1.22262 0.95174 0.92384 1.54967 0.92807 1.19227 0.97132 0.89572 0.84877 0.92515 1.22363 1.01645 0.97162 0.93384 1.22991 0.90372 1.03374 1.04508 1.22692 1.01440 1.02404 0.95317 1.65181 1.12324 1.43578 1.03375 1.22953 0.92477 0.99760 0.93174 1.22465 0.97772 0.98909 0.97074 1.22329 0.97375 0.98588 0.98056 1.22606 0.96613 1.00105 0.89432 0.91519 0.90312 0.87318 0.91705 0.91037 0.89120 0.92495 0.92578 0.92594 0.92216 0.92470 0.92765 0.90918 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.93 13.55 55.43 0.75 -25.18 16 2 C 0.03 0.80 4.77 -17.82 -0.08 0.72 16 3 Si 1.06 24.41 29.91 -169.99 -5.08 19.33 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.61 -15.65 4.37 -34.44 -0.15 -15.80 16 8 H 0.05 1.42 5.64 -52.48 -0.30 1.12 16 9 C 0.20 4.82 2.46 -68.87 -0.17 4.66 16 10 H 0.06 1.54 5.72 -51.93 -0.30 1.25 16 11 C -0.13 -2.77 5.09 -90.62 -0.46 -3.23 16 12 C -0.18 -3.61 9.64 -26.70 -0.26 -3.86 16 13 C -0.18 -3.72 10.13 -26.69 -0.27 -3.99 16 14 N -0.52 -11.74 5.30 -223.89 -1.19 -12.93 16 15 C 0.04 0.91 5.69 -1.90 -0.01 0.90 16 16 C -0.12 -2.16 7.06 -24.87 -0.18 -2.33 16 17 C -0.13 -2.30 6.93 -25.38 -0.18 -2.47 16 18 C 0.04 0.90 6.46 -2.76 -0.02 0.88 16 19 H 0.27 7.83 6.28 -40.82 -0.26 7.57 16 20 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 21 H 0.11 2.45 5.97 -51.93 -0.31 2.14 16 22 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 23 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 24 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 25 H 0.06 1.11 8.02 -51.93 -0.42 0.69 16 26 H 0.06 1.25 5.92 -51.93 -0.31 0.95 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.85 5.92 -51.93 -0.31 1.54 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 249.41 15.07 3.76 3.76 Total: -1.00 -27.03 249.41 -8.33 -35.36 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.79 Total: 4.20 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -1.77 Total: -24.54 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.44 Total: -38.10 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.08 Total: 19.33 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.03 -8.33 -35.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260778527.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.555 kcal (2) G-P(sol) polarization free energy of solvation -27.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds