Wall clock time and date at job start Mon Mar 30 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00249 * 2 1 4 4 H 1.48502 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47377 * 299.99839 * 3 2 1 6 6 H 1.48502 * 109.46965 * 59.99961 * 3 2 1 7 7 C 1.37885 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99962 * 172.69140 * 7 2 1 9 9 C 1.50697 * 119.99693 * 352.68828 * 7 2 1 10 10 N 1.46896 * 112.91055 * 283.59528 * 9 7 2 11 11 C 1.48536 * 110.99736 * 74.27740 * 10 9 7 12 12 C 1.54938 * 103.22584 * 159.72297 * 11 10 9 13 13 C 1.54601 * 102.92150 * 322.58365 * 12 11 10 14 14 C 1.47899 * 111.00339 * 191.67015 * 10 9 7 15 15 C 1.53784 * 113.61646 * 54.85014 * 9 7 2 16 16 C 1.53782 * 87.08128 * 89.11343 * 15 9 7 17 17 C 1.53782 * 87.17412 * 25.39129 * 16 15 9 18 18 H 0.96993 * 119.99467 * 359.97438 * 1 2 3 19 19 H 1.09004 * 110.66659 * 278.15115 * 11 10 9 20 20 H 1.08990 * 110.66959 * 41.28418 * 11 10 9 21 21 H 1.08996 * 110.72375 * 204.22755 * 12 11 10 22 22 H 1.09004 * 110.87777 * 81.01272 * 12 11 10 23 23 H 1.08996 * 110.30707 * 263.04023 * 13 12 11 24 24 H 1.09001 * 110.30958 * 140.87685 * 13 12 11 25 25 H 1.08998 * 109.91847 * 333.51100 * 14 10 9 26 26 H 1.09007 * 109.91713 * 94.80078 * 14 10 9 27 27 H 1.09002 * 113.60998 * 334.56672 * 15 9 7 28 28 H 1.09003 * 113.61566 * 203.66077 * 15 9 7 29 29 H 1.08998 * 113.61322 * 139.98627 * 16 15 9 30 30 H 1.09007 * 113.61364 * 270.80363 * 16 15 9 31 31 H 1.08995 * 113.61503 * 89.15913 * 17 16 15 32 32 H 1.08995 * 113.61270 * 220.06378 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0780 -1.1980 -0.1184 9 6 1.2602 -2.4938 0.1672 10 7 0.8483 -2.7430 1.5551 11 6 -0.2975 -1.8770 1.9339 12 6 -0.9095 -2.6120 3.1528 13 6 -0.7540 -4.1022 2.7717 14 6 0.3762 -4.1341 1.7262 15 6 0.1292 -2.6916 -0.8559 16 6 1.1775 -3.3476 -1.7701 17 6 1.9626 -3.6937 -0.4939 18 1 -0.4849 0.8400 0.0004 19 1 0.0488 -0.8833 2.2181 20 1 -1.0191 -1.8157 1.1195 21 1 -1.9613 -2.3521 3.2717 22 1 -0.3527 -2.3863 4.0623 23 1 -1.6802 -4.4808 2.3394 24 1 -0.4764 -4.6896 3.6470 25 1 -0.0049 -4.5161 0.7792 26 1 1.1930 -4.7624 2.0814 27 1 -0.2708 -1.7575 -1.2504 28 1 -0.6482 -3.3780 -0.5202 29 1 0.8051 -4.2217 -2.3043 30 1 1.6923 -2.6411 -2.4213 31 1 1.6874 -4.6546 -0.0591 32 1 3.0403 -3.5676 -0.5966 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260791140.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:30 Heat of formation + Delta-G solvation = 30.996121 kcal Electronic energy + Delta-G solvation = -13319.838899 eV Core-core repulsion = 11281.145074 eV Total energy + Delta-G solvation = -2038.693824 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.04451 -35.59025 -32.30506 -29.47152 -27.78393 -25.89954 -24.24527 -22.30580 -20.41480 -19.80829 -17.83976 -16.00512 -15.18365 -14.86937 -14.53106 -13.62790 -12.96623 -12.47824 -12.16403 -11.99833 -11.41979 -11.33170 -11.00721 -10.76873 -10.53587 -10.37276 -10.14114 -9.90244 -9.74123 -9.61941 -9.46414 -8.98835 -8.79252 -8.27963 -6.80132 -5.97038 -4.07320 3.29821 3.38662 3.43528 4.42567 5.11420 5.48134 5.58627 5.60738 5.82964 5.98938 6.13384 6.19843 6.26553 6.29589 6.52216 6.53447 6.58688 6.67171 6.71292 6.80649 6.86537 7.02991 7.30154 7.36491 7.45689 7.70160 7.76540 8.00854 8.19118 8.63326 8.77239 8.98507 9.57034 11.01400 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035398 B = 0.016726 C = 0.013089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.809565 B = 1673.590293 C = 2138.648875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.069 3.931 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.476 4.476 8 H 0.060 0.940 9 C 0.226 3.774 10 N -0.507 5.507 11 C 0.076 3.924 12 C -0.137 4.137 13 C -0.128 4.128 14 C 0.028 3.972 15 C -0.161 4.161 16 C -0.131 4.131 17 C -0.147 4.147 18 H 0.259 0.741 19 H 0.075 0.925 20 H 0.060 0.940 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 -4.630 1.725 5.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.139 3.861 10 N -0.230 5.230 11 C -0.052 4.052 12 C -0.175 4.175 13 C -0.166 4.166 14 C -0.101 4.101 15 C -0.201 4.201 16 C -0.169 4.169 17 C -0.185 4.185 18 H 0.069 0.931 19 H 0.093 0.907 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.275 -4.399 2.049 5.017 hybrid contribution -0.295 0.648 -0.483 0.861 sum -1.570 -3.751 1.566 4.357 Atomic orbital electron populations 1.70006 1.05754 1.26090 1.49779 1.24946 0.94845 0.98913 0.94621 0.86559 0.80356 0.83768 0.77423 1.19802 1.21290 1.20966 1.20661 0.93313 0.89111 1.48440 0.92196 1.20036 0.91591 0.92270 0.82231 1.65189 1.32044 0.99895 1.25919 1.22984 0.91960 0.96325 0.93920 1.22708 0.99489 0.95173 1.00178 1.22360 0.98274 0.97320 0.98667 1.22882 0.95548 0.94898 0.96737 1.23426 0.96723 1.00298 0.99621 1.22559 0.99624 0.98668 0.96035 1.23323 0.98955 0.98524 0.97654 0.93129 0.90668 0.92189 0.92821 0.92302 0.92884 0.92619 0.94471 0.92562 0.88728 0.94177 0.94544 0.90873 0.92212 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.38 8.11 55.43 0.45 -22.93 16 2 C 0.07 1.84 4.73 -17.81 -0.08 1.75 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.48 -12.89 8.27 -34.44 -0.28 -13.17 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.23 5.58 0.88 -131.85 -0.12 5.47 16 10 N -0.51 -12.01 5.30 -215.14 -1.14 -13.15 16 11 C 0.08 1.76 4.62 -1.90 -0.01 1.75 16 12 C -0.14 -2.60 7.06 -24.87 -0.18 -2.78 16 13 C -0.13 -2.26 6.93 -25.37 -0.18 -2.43 16 14 C 0.03 0.56 4.96 -2.76 -0.01 0.55 16 15 C -0.16 -3.84 5.08 -25.92 -0.13 -3.97 16 16 C -0.13 -2.82 7.80 -25.92 -0.20 -3.02 16 17 C -0.15 -3.23 6.89 -25.82 -0.18 -3.41 16 18 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 19 H 0.07 1.93 7.10 -51.93 -0.37 1.56 16 20 H 0.06 1.50 5.95 -51.93 -0.31 1.19 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.76 5.08 -51.93 -0.26 0.50 16 26 H 0.06 1.08 8.06 -51.93 -0.42 0.67 16 27 H 0.09 2.50 6.15 -51.93 -0.32 2.18 16 28 H 0.04 0.93 6.49 -51.93 -0.34 0.59 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.61 8.14 -51.92 -0.42 1.19 16 31 H 0.06 1.22 5.97 -51.93 -0.31 0.91 16 32 H 0.05 1.14 8.09 -51.93 -0.42 0.72 16 LS Contribution 239.37 15.07 3.61 3.61 Total: -1.00 -26.77 239.37 -8.30 -35.07 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.83 Total: 0.75 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.37 Total: -19.27 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.69 Total: -36.08 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -26.77 -8.30 -35.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260791140.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.070 kcal (2) G-P(sol) polarization free energy of solvation -26.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds