Wall clock time and date at job start Mon Mar 30 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00249 * 2 1 4 4 H 1.48502 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47377 * 299.99839 * 3 2 1 6 6 H 1.48502 * 109.46965 * 59.99961 * 3 2 1 7 7 C 1.37885 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99962 * 172.69140 * 7 2 1 9 9 C 1.50697 * 119.99693 * 352.68828 * 7 2 1 10 10 N 1.46896 * 112.91055 * 283.59528 * 9 7 2 11 11 C 1.48536 * 110.99736 * 74.27740 * 10 9 7 12 12 C 1.54938 * 103.22584 * 159.72297 * 11 10 9 13 13 C 1.54601 * 102.92150 * 322.58365 * 12 11 10 14 14 C 1.47899 * 111.00339 * 191.67015 * 10 9 7 15 15 C 1.53784 * 113.61646 * 54.85014 * 9 7 2 16 16 C 1.53782 * 87.08128 * 89.11343 * 15 9 7 17 17 C 1.53782 * 87.17412 * 25.39129 * 16 15 9 18 18 H 0.96993 * 119.99467 * 359.97438 * 1 2 3 19 19 H 1.09004 * 110.66659 * 278.15115 * 11 10 9 20 20 H 1.08990 * 110.66959 * 41.28418 * 11 10 9 21 21 H 1.08996 * 110.72375 * 204.22755 * 12 11 10 22 22 H 1.09004 * 110.87777 * 81.01272 * 12 11 10 23 23 H 1.08996 * 110.30707 * 263.04023 * 13 12 11 24 24 H 1.09001 * 110.30958 * 140.87685 * 13 12 11 25 25 H 1.08998 * 109.91847 * 333.51100 * 14 10 9 26 26 H 1.09007 * 109.91713 * 94.80078 * 14 10 9 27 27 H 1.09002 * 113.60998 * 334.56672 * 15 9 7 28 28 H 1.09003 * 113.61566 * 203.66077 * 15 9 7 29 29 H 1.08998 * 113.61322 * 139.98627 * 16 15 9 30 30 H 1.09007 * 113.61364 * 270.80363 * 16 15 9 31 31 H 1.08995 * 113.61503 * 89.15913 * 17 16 15 32 32 H 1.08995 * 113.61270 * 220.06378 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0780 -1.1980 -0.1184 9 6 1.2602 -2.4938 0.1672 10 7 0.8483 -2.7430 1.5551 11 6 -0.2975 -1.8770 1.9339 12 6 -0.9095 -2.6120 3.1528 13 6 -0.7540 -4.1022 2.7717 14 6 0.3762 -4.1341 1.7262 15 6 0.1292 -2.6916 -0.8559 16 6 1.1775 -3.3476 -1.7701 17 6 1.9626 -3.6937 -0.4939 18 1 -0.4849 0.8400 0.0004 19 1 0.0488 -0.8833 2.2181 20 1 -1.0191 -1.8157 1.1195 21 1 -1.9613 -2.3521 3.2717 22 1 -0.3527 -2.3863 4.0623 23 1 -1.6802 -4.4808 2.3394 24 1 -0.4764 -4.6896 3.6470 25 1 -0.0049 -4.5161 0.7792 26 1 1.1930 -4.7624 2.0814 27 1 -0.2708 -1.7575 -1.2504 28 1 -0.6482 -3.3780 -0.5202 29 1 0.8051 -4.2217 -2.3043 30 1 1.6923 -2.6411 -2.4213 31 1 1.6874 -4.6546 -0.0591 32 1 3.0403 -3.5676 -0.5966 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260791140.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:30 Heat of formation + Delta-G solvation = 14.879346 kcal Electronic energy + Delta-G solvation = -13320.537775 eV Core-core repulsion = 11281.145074 eV Total energy + Delta-G solvation = -2039.392700 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.82156 -37.27048 -34.32139 -31.13638 -29.43828 -27.87470 -26.06798 -24.12757 -22.10930 -21.41868 -19.71215 -17.85392 -17.02131 -16.62555 -16.33088 -15.45731 -14.68219 -14.16769 -13.94427 -13.77733 -13.18393 -13.05734 -12.90126 -12.54498 -12.36857 -12.02296 -11.83225 -11.62333 -11.53689 -11.33167 -11.17347 -10.89930 -10.67065 -10.25063 -8.62814 -7.97919 -6.15223 1.39918 1.44366 1.53662 2.45547 3.14912 3.81407 4.03060 4.05611 4.20808 4.26569 4.35151 4.47103 4.66164 4.74065 4.84053 4.95609 4.98179 5.05963 5.10841 5.14819 5.26144 5.38912 5.49773 5.54778 5.62026 5.72861 5.86333 6.01147 6.36404 6.64140 6.90329 7.05556 7.50697 8.97003 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035398 B = 0.016726 C = 0.013089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.809565 B = 1673.590293 C = 2138.648875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.034 3.966 3 Si 0.944 3.056 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.502 4.502 8 H 0.044 0.956 9 C 0.210 3.790 10 N -0.526 5.526 11 C 0.081 3.919 12 C -0.130 4.130 13 C -0.120 4.120 14 C 0.026 3.974 15 C -0.156 4.156 16 C -0.120 4.120 17 C -0.138 4.138 18 H 0.258 0.742 19 H 0.039 0.961 20 H 0.036 0.964 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.865 -5.873 2.287 6.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.168 4.168 3 Si 0.771 3.229 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.122 3.878 10 N -0.250 5.250 11 C -0.047 4.047 12 C -0.168 4.168 13 C -0.157 4.157 14 C -0.103 4.103 15 C -0.196 4.196 16 C -0.158 4.158 17 C -0.176 4.176 18 H 0.067 0.933 19 H 0.058 0.942 20 H 0.054 0.946 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.543 -5.650 2.611 6.412 hybrid contribution -0.211 1.039 -0.654 1.246 sum -1.755 -4.610 1.957 5.307 Atomic orbital electron populations 1.70124 1.06417 1.26394 1.49704 1.25491 0.95587 1.01249 0.94429 0.85741 0.79152 0.80718 0.77333 1.19947 1.20832 1.20912 1.20852 0.92840 0.90944 1.49451 0.93736 1.20092 0.92212 0.92409 0.83117 1.65020 1.32648 1.01982 1.25301 1.22730 0.91482 0.95427 0.95056 1.22643 1.00266 0.95693 0.98221 1.22341 0.98001 0.96460 0.98945 1.22952 0.96916 0.92745 0.97644 1.23277 0.96991 0.99168 1.00151 1.22471 0.98338 0.99236 0.95759 1.23273 0.98553 0.98380 0.97419 0.93293 0.94228 0.94554 0.91028 0.91740 0.91313 0.89922 0.94669 0.91472 0.91898 0.93603 0.91511 0.91949 0.90244 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.34 8.11 21.45 0.17 -48.17 16 2 C 0.03 1.81 4.73 84.66 0.40 2.22 16 3 Si 0.94 43.65 29.54 68.60 2.03 45.67 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.50 -27.61 8.27 25.60 0.21 -27.40 16 8 H 0.04 2.51 7.82 -2.91 -0.02 2.48 16 9 C 0.21 10.32 0.88 3.37 0.00 10.33 16 10 N -0.53 -24.55 5.30 -834.57 -4.42 -28.98 16 11 C 0.08 3.76 4.62 86.65 0.40 4.16 16 12 C -0.13 -4.65 7.06 31.80 0.22 -4.42 16 13 C -0.12 -3.79 6.93 31.47 0.22 -3.57 16 14 C 0.03 0.97 4.96 86.44 0.43 1.40 16 15 C -0.16 -7.41 5.08 31.12 0.16 -7.25 16 16 C -0.12 -5.02 7.80 31.12 0.24 -4.77 16 17 C -0.14 -5.91 6.89 31.18 0.21 -5.70 16 18 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 19 H 0.04 2.08 7.10 -2.38 -0.02 2.06 16 20 H 0.04 1.84 5.95 -2.39 -0.01 1.82 16 21 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 22 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.04 1.34 5.08 -2.39 -0.01 1.33 16 26 H 0.07 2.38 8.06 -2.38 -0.02 2.36 16 27 H 0.06 3.38 6.15 -2.39 -0.01 3.37 16 28 H 0.05 2.08 6.49 -2.39 -0.02 2.06 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 31 H 0.08 3.05 5.97 -2.39 -0.01 3.04 16 32 H 0.05 2.05 8.09 -2.39 -0.02 2.03 16 Total: -1.00 -57.17 239.37 1.37 -55.81 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.08 Total: 10.67 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 2.50 Total: -35.01 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -4.25 Total: -77.14 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -57.17 1.37 -55.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260791140.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.684 kcal (2) G-P(sol) polarization free energy of solvation -57.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds