Wall clock time and date at job start Mon Mar 30 2020 02:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46492 * 109.47070 * 2 1 4 4 N 1.40061 * 126.04654 * 270.00221 * 3 2 1 5 5 C 1.30838 * 108.39354 * 179.71607 * 4 3 2 6 6 C 1.39778 * 108.32016 * 0.44434 * 5 4 3 7 7 C 1.50703 * 126.09209 * 179.81583 * 6 5 4 8 8 C 1.50701 * 109.47064 * 264.68675 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99594 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99875 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47061 * 90.00257 * 12 10 8 14 14 H 1.48497 * 109.46906 * 209.99430 * 12 10 8 15 15 H 1.48498 * 109.47403 * 329.99876 * 12 10 8 16 16 C 1.35261 * 126.04355 * 90.00020 * 3 2 1 17 17 N 1.39204 * 126.21520 * 0.02562 * 16 3 2 18 18 H 1.08999 * 109.46890 * 299.99497 * 1 2 3 19 19 H 1.08991 * 109.47175 * 59.99780 * 1 2 3 20 20 H 1.09003 * 109.46989 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47017 * 239.99998 * 2 1 3 22 22 H 1.08998 * 109.47229 * 120.00592 * 2 1 3 23 23 H 1.08005 * 125.83952 * 180.25515 * 5 4 3 24 24 H 1.09002 * 109.47152 * 144.68768 * 7 6 5 25 25 H 1.09001 * 109.46980 * 24.68868 * 7 6 5 26 26 H 0.97002 * 119.99739 * 180.02562 * 11 10 8 27 27 H 0.96997 * 119.99547 * 180.02562 * 17 16 3 28 28 H 0.96996 * 120.00357 * 359.97438 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2931 2.1582 -1.1324 5 6 2.7028 3.3357 -0.7357 6 6 2.7141 3.3490 0.6620 7 6 3.1235 4.5068 1.5355 8 6 4.5705 4.3533 1.9275 9 1 5.1372 3.5026 1.5787 10 6 5.1713 5.2994 2.7307 11 7 6.4342 5.1655 3.0724 12 14 4.1914 6.7710 3.3334 13 1 3.5478 6.4397 4.6301 14 1 5.1010 7.9307 3.5145 15 1 3.1465 7.1125 2.3351 16 6 2.2837 2.1315 1.0937 17 7 2.1428 1.7314 2.4195 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 2.9870 4.1560 -1.3782 24 1 2.5039 4.5224 2.4321 25 1 2.9927 5.4397 0.9871 26 1 6.8568 5.8309 3.6377 27 1 2.3598 2.3466 3.1374 28 1 1.8268 0.8378 2.6255 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260861436.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:38 Heat of formation + Delta-G solvation = 70.709859 kcal Electronic energy + Delta-G solvation = -12099.214176 eV Core-core repulsion = 9958.702125 eV Total energy + Delta-G solvation = -2140.512051 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.46100 -34.41727 -33.95839 -32.65274 -30.34284 -28.52063 -26.37503 -23.53038 -22.05701 -20.06405 -19.09063 -16.94358 -16.61725 -15.52423 -14.87509 -14.44590 -14.08308 -13.78926 -12.89451 -12.59405 -12.36014 -12.10358 -11.75963 -11.46852 -11.26667 -10.68260 -10.37128 -10.20922 -9.92446 -9.56815 -9.20474 -8.46125 -8.11169 -6.66209 -5.94956 -3.91133 2.79839 2.98618 3.34501 3.43413 3.48169 3.84374 4.37233 4.51895 4.78900 5.09716 5.24415 5.37227 5.53667 5.56719 5.88899 6.06140 6.28544 6.44792 6.85923 7.08540 7.22698 7.53997 7.63226 7.87398 8.06110 8.22472 8.68010 8.70655 9.14502 9.67856 11.18694 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.059036 B = 0.009398 C = 0.009172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.169613 B = 2978.618142 C = 3052.061693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.137 3.863 3 N -0.408 5.408 4 N -0.333 5.333 5 C 0.076 3.924 6 C -0.257 4.257 7 C 0.064 3.936 8 C -0.502 4.502 9 H 0.069 0.931 10 C 0.063 3.937 11 N -0.907 5.907 12 Si 0.876 3.124 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.264 1.264 16 C 0.350 3.650 17 N -0.855 5.855 18 H 0.057 0.943 19 H 0.064 0.936 20 H 0.068 0.932 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.174 0.826 24 H 0.008 0.992 25 H 0.022 0.978 26 H 0.261 0.739 27 H 0.419 0.581 28 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.290 -8.034 -2.367 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 N -0.199 5.199 4 N -0.156 5.156 5 C -0.108 4.108 6 C -0.272 4.272 7 C 0.026 3.974 8 C -0.541 4.541 9 H 0.087 0.913 10 C -0.137 4.137 11 N -0.547 5.547 12 Si 0.704 3.296 13 H -0.205 1.205 14 H -0.216 1.216 15 H -0.189 1.189 16 C 0.126 3.874 17 N -0.405 5.405 18 H 0.076 0.924 19 H 0.083 0.917 20 H 0.087 0.913 21 H 0.107 0.893 22 H 0.096 0.904 23 H 0.191 0.809 24 H 0.026 0.974 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.251 0.749 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.431 -8.778 -3.360 14.799 hybrid contribution -0.126 1.090 1.518 1.873 sum -11.557 -7.687 -1.842 14.002 Atomic orbital electron populations 1.22201 0.95270 1.02150 1.03088 1.21323 0.94401 0.79505 1.03311 1.48212 1.57144 1.11568 1.02939 1.77241 1.27814 1.04625 1.05885 1.23416 0.97571 0.95076 0.94770 1.19593 1.17034 0.96675 0.93945 1.17897 0.96119 0.90884 0.92501 1.21183 0.94192 1.09207 1.29470 0.91263 1.25045 0.94744 0.97804 0.96097 1.69924 1.11372 1.35928 1.37481 0.86828 0.80338 0.82970 0.79453 1.20524 1.21570 1.18880 1.17660 0.97531 0.90937 0.81289 1.41444 1.78445 1.18074 1.02561 0.92352 0.91701 0.91272 0.89328 0.90361 0.80876 0.97373 0.95947 0.92944 0.74853 0.78617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 10.24 37.16 0.38 -1.41 15 2 C 0.14 1.74 6.97 -4.04 -0.03 1.71 15 3 N -0.41 -7.33 3.62 -60.46 -0.22 -7.54 15 4 N -0.33 -6.69 12.56 30.61 0.38 -6.31 15 5 C 0.08 1.59 11.95 -17.40 -0.21 1.38 15 6 C -0.26 -5.72 5.32 -104.79 -0.56 -6.28 15 7 C 0.06 1.57 4.28 -29.03 -0.12 1.45 15 8 C -0.50 -14.39 9.65 -34.44 -0.33 -14.72 15 9 H 0.07 2.22 7.98 -52.49 -0.42 1.80 15 10 C 0.06 1.84 5.47 -17.82 -0.10 1.74 15 11 N -0.91 -28.13 13.96 55.43 0.77 -27.35 15 12 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 15 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 15 H -0.26 -6.26 6.54 56.52 0.37 -5.89 15 16 C 0.35 6.83 7.94 -153.40 -1.22 5.62 15 17 N -0.86 -13.65 9.10 31.10 0.28 -13.37 15 18 H 0.06 0.65 8.14 -51.93 -0.42 0.22 15 19 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 20 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 22 H 0.08 0.84 7.50 -51.93 -0.39 0.45 15 23 H 0.17 3.18 8.06 -52.48 -0.42 2.76 15 24 H 0.01 0.19 7.22 -51.93 -0.38 -0.18 15 25 H 0.02 0.55 7.20 -51.93 -0.37 0.17 15 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 27 H 0.42 6.94 8.34 -40.82 -0.34 6.60 15 28 H 0.39 4.74 8.09 -40.82 -0.33 4.41 15 LS Contribution 244.54 15.07 3.69 3.69 Total: -1.00 -33.38 244.54 -5.45 -38.83 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -3.51 Total: 5.68 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.18 Total: -10.50 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 1.22 Total: -54.58 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -33.38 -5.45 -38.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260861436.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.541 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds