Wall clock time and date at job start Mon Mar 30 2020 02:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46492 * 109.47070 * 2 1 4 4 N 1.40061 * 126.04654 * 270.00221 * 3 2 1 5 5 C 1.30838 * 108.39354 * 179.71607 * 4 3 2 6 6 C 1.39778 * 108.32016 * 0.44434 * 5 4 3 7 7 C 1.50703 * 126.09209 * 179.81583 * 6 5 4 8 8 C 1.50701 * 109.47064 * 264.68675 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99594 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99875 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47061 * 90.00257 * 12 10 8 14 14 H 1.48497 * 109.46906 * 209.99430 * 12 10 8 15 15 H 1.48498 * 109.47403 * 329.99876 * 12 10 8 16 16 C 1.35261 * 126.04355 * 90.00020 * 3 2 1 17 17 N 1.39204 * 126.21520 * 0.02562 * 16 3 2 18 18 H 1.08999 * 109.46890 * 299.99497 * 1 2 3 19 19 H 1.08991 * 109.47175 * 59.99780 * 1 2 3 20 20 H 1.09003 * 109.46989 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47017 * 239.99998 * 2 1 3 22 22 H 1.08998 * 109.47229 * 120.00592 * 2 1 3 23 23 H 1.08005 * 125.83952 * 180.25515 * 5 4 3 24 24 H 1.09002 * 109.47152 * 144.68768 * 7 6 5 25 25 H 1.09001 * 109.46980 * 24.68868 * 7 6 5 26 26 H 0.97002 * 119.99739 * 180.02562 * 11 10 8 27 27 H 0.96997 * 119.99547 * 180.02562 * 17 16 3 28 28 H 0.96996 * 120.00357 * 359.97438 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2931 2.1582 -1.1324 5 6 2.7028 3.3357 -0.7357 6 6 2.7141 3.3490 0.6620 7 6 3.1235 4.5068 1.5355 8 6 4.5705 4.3533 1.9275 9 1 5.1372 3.5026 1.5787 10 6 5.1713 5.2994 2.7307 11 7 6.4342 5.1655 3.0724 12 14 4.1914 6.7710 3.3334 13 1 3.5478 6.4397 4.6301 14 1 5.1010 7.9307 3.5145 15 1 3.1465 7.1125 2.3351 16 6 2.2837 2.1315 1.0937 17 7 2.1428 1.7314 2.4195 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 2.9870 4.1560 -1.3782 24 1 2.5039 4.5224 2.4321 25 1 2.9927 5.4397 0.9871 26 1 6.8568 5.8309 3.6377 27 1 2.3598 2.3466 3.1374 28 1 1.8268 0.8378 2.6255 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260861436.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:38 Heat of formation + Delta-G solvation = 47.045490 kcal Electronic energy + Delta-G solvation = -12100.240340 eV Core-core repulsion = 9958.702125 eV Total energy + Delta-G solvation = -2141.538215 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.94867 -35.80073 -35.49861 -34.51380 -32.11413 -29.88350 -28.12249 -24.87274 -23.84010 -21.48499 -20.65339 -18.82668 -18.27625 -16.96217 -16.33838 -15.97662 -15.76815 -14.95065 -14.71867 -14.28293 -13.77432 -13.45916 -13.35892 -12.86584 -12.61531 -12.26014 -12.05356 -11.77849 -11.76636 -11.47212 -11.18678 -10.66987 -9.54983 -8.25675 -8.16073 -6.20865 1.30002 1.42084 1.45728 1.58218 1.66377 2.20912 2.44619 3.08969 3.16096 3.72674 4.15677 4.24824 4.35886 4.62097 4.78072 4.82238 4.96134 5.17476 5.21547 5.25223 5.62837 5.70896 5.87937 6.03151 6.45739 6.62007 6.85517 6.89028 7.24991 7.42530 8.98608 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.059036 B = 0.009398 C = 0.009172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.169613 B = 2978.618142 C = 3052.061693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.122 3.878 3 N -0.403 5.403 4 N -0.345 5.345 5 C 0.064 3.936 6 C -0.305 4.305 7 C 0.076 3.924 8 C -0.503 4.503 9 H 0.018 0.982 10 C 0.003 3.997 11 N -0.957 5.957 12 Si 0.952 3.048 13 H -0.263 1.263 14 H -0.290 1.290 15 H -0.248 1.248 16 C 0.357 3.643 17 N -0.840 5.840 18 H 0.054 0.946 19 H 0.048 0.952 20 H 0.104 0.896 21 H 0.097 0.903 22 H 0.103 0.897 23 H 0.186 0.814 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.263 0.737 27 H 0.418 0.582 28 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.330 -8.486 -1.831 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 N -0.194 5.194 4 N -0.168 5.168 5 C -0.120 4.120 6 C -0.321 4.321 7 C 0.037 3.963 8 C -0.542 4.542 9 H 0.037 0.963 10 C -0.193 4.193 11 N -0.599 5.599 12 Si 0.775 3.225 13 H -0.188 1.188 14 H -0.216 1.216 15 H -0.171 1.171 16 C 0.129 3.871 17 N -0.392 5.392 18 H 0.073 0.927 19 H 0.067 0.933 20 H 0.122 0.878 21 H 0.115 0.885 22 H 0.121 0.879 23 H 0.203 0.797 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.250 0.750 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -13.507 -9.286 -2.832 16.633 hybrid contribution 0.540 1.059 1.326 1.781 sum -12.967 -8.226 -1.506 15.430 Atomic orbital electron populations 1.22131 0.93329 1.04144 1.02098 1.21843 0.95994 0.76937 1.05000 1.48578 1.56179 1.12838 1.01788 1.77160 1.27985 1.04562 1.07090 1.23646 0.97862 0.95879 0.94640 1.19577 1.20342 0.97608 0.94553 1.17678 0.93279 0.92006 0.93293 1.21347 0.96166 1.07533 1.29129 0.96346 1.25991 0.95743 1.01283 0.96235 1.70092 1.13580 1.37476 1.38744 0.85638 0.78885 0.78271 0.79688 1.18756 1.21591 1.17131 1.17726 0.96048 0.90542 0.82736 1.41410 1.77557 1.19106 1.01121 0.92685 0.93287 0.87759 0.88490 0.87907 0.79719 0.96150 0.96029 0.92771 0.75030 0.76288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.24 71.99 0.74 -2.16 15 2 C 0.12 2.78 6.97 86.38 0.60 3.38 15 3 N -0.40 -13.85 3.62 -345.18 -1.25 -15.10 15 4 N -0.35 -13.64 12.56 -57.08 -0.72 -14.35 15 5 C 0.06 2.67 11.95 85.21 1.02 3.69 15 6 C -0.30 -13.51 5.32 -19.97 -0.11 -13.61 15 7 C 0.08 3.68 4.28 29.10 0.12 3.80 15 8 C -0.50 -29.40 9.65 25.60 0.25 -29.15 15 9 H 0.02 1.22 7.98 -2.91 -0.02 1.20 15 10 C 0.00 0.18 5.47 84.66 0.46 0.64 15 11 N -0.96 -60.62 13.96 21.45 0.30 -60.32 15 12 Si 0.95 44.07 27.47 68.60 1.88 45.96 15 13 H -0.26 -11.42 7.11 99.48 0.71 -10.72 15 14 H -0.29 -13.36 7.11 99.48 0.71 -12.65 15 15 H -0.25 -10.74 6.54 99.48 0.65 -10.09 15 16 C 0.36 13.50 7.94 131.42 1.04 14.55 15 17 N -0.84 -25.23 9.10 -55.50 -0.51 -25.74 15 18 H 0.05 1.05 8.14 -2.39 -0.02 1.03 15 19 H 0.05 1.06 8.14 -2.39 -0.02 1.04 15 20 H 0.10 1.19 8.14 -2.39 -0.02 1.17 15 21 H 0.10 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.10 1.84 7.50 -2.39 -0.02 1.82 15 23 H 0.19 6.85 8.06 -2.91 -0.02 6.83 15 24 H 0.02 0.92 7.22 -2.39 -0.02 0.91 15 25 H 0.02 1.03 7.20 -2.39 -0.02 1.02 15 26 H 0.26 15.57 8.31 -92.71 -0.77 14.80 15 27 H 0.42 13.16 8.34 -92.71 -0.77 12.39 15 28 H 0.41 8.80 8.09 -92.71 -0.75 8.05 15 Total: -1.00 -73.00 244.54 3.43 -69.56 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.41 Total: 18.85 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 4.13 Total: -18.86 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -2.17 Total: -115.51 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.96 kcal Total: -73.00 3.43 -69.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260861436.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.609 kcal (2) G-P(sol) polarization free energy of solvation -72.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds