Wall clock time and date at job start Mon Mar 30 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00156 * 2 1 4 4 H 1.48500 * 109.46590 * 270.00083 * 3 2 1 5 5 H 1.48505 * 109.46852 * 29.99469 * 3 2 1 6 6 H 1.48496 * 109.47351 * 149.99937 * 3 2 1 7 7 C 1.37875 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99672 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.30168 * 302.16113 * 9 7 2 11 11 C 1.55336 * 110.33555 * 179.97438 * 9 7 2 12 12 C 1.53926 * 102.08612 * 218.92064 * 11 9 7 13 13 H 1.08997 * 111.00205 * 281.34403 * 12 11 9 14 14 C 1.52358 * 113.27111 * 155.08877 * 12 11 9 15 15 C 1.53642 * 107.59203 * 185.05678 * 14 12 11 16 16 C 1.52943 * 110.64041 * 56.40638 * 15 14 12 17 17 C 1.53634 * 110.58458 * 306.17130 * 16 15 14 18 18 N 1.45537 * 107.90737 * 57.10517 * 17 16 15 19 19 C 1.46334 * 117.21158 * 174.43695 * 18 17 16 20 20 H 0.97001 * 119.99712 * 0.02562 * 1 2 3 21 21 H 1.09001 * 110.90472 * 100.72944 * 11 9 7 22 22 H 1.08994 * 110.90860 * 337.12037 * 11 9 7 23 23 H 1.09001 * 109.83649 * 304.57060 * 14 12 11 24 24 H 1.08997 * 109.83723 * 65.46505 * 14 12 11 25 25 H 1.09004 * 109.24679 * 176.70142 * 15 14 12 26 26 H 1.09006 * 109.24691 * 296.15401 * 15 14 12 27 27 H 1.09004 * 109.31766 * 185.85659 * 16 15 14 28 28 H 1.09003 * 109.22802 * 66.42651 * 16 15 14 29 29 H 1.09002 * 109.78391 * 297.48624 * 17 16 15 30 30 H 1.09002 * 109.78301 * 176.72534 * 17 16 15 31 31 H 1.09005 * 110.15725 * 271.04291 * 19 18 17 32 32 H 1.09003 * 110.15179 * 32.79316 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.5910 -2.5539 0.8674 11 6 2.2425 -3.6949 0.0015 12 6 1.5460 -4.6909 -0.9431 13 1 0.7373 -5.2135 -0.4324 14 6 2.5100 -5.6676 -1.6049 15 6 1.7040 -6.5084 -2.6070 16 6 0.9895 -5.6072 -3.6151 17 6 0.1392 -4.5531 -2.8897 18 7 1.0180 -3.7985 -2.0085 19 6 0.4386 -2.6524 -1.3070 20 1 -0.4850 0.8401 -0.0004 21 1 2.3456 -4.1149 1.0020 22 1 3.2126 -3.3958 -0.3953 23 1 3.2922 -5.1179 -2.1285 24 1 2.9554 -6.3160 -0.8505 25 1 2.3796 -7.1780 -3.1394 26 1 0.9641 -7.0994 -2.0670 27 1 0.3439 -6.2157 -4.2486 28 1 1.7311 -5.1051 -4.2364 29 1 -0.6371 -5.0450 -2.3036 30 1 -0.3174 -3.8827 -3.6178 31 1 0.5330 -1.7528 -1.9152 32 1 -0.6099 -2.8432 -1.0780 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260939499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:04 Heat of formation + Delta-G solvation = -12.707907 kcal Electronic energy + Delta-G solvation = -12829.384142 eV Core-core repulsion = 10788.795169 eV Total energy + Delta-G solvation = -2040.588973 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.04002 -34.68622 -32.23341 -31.50985 -28.57571 -26.29397 -24.57636 -22.12913 -20.81903 -19.44008 -19.14266 -16.12180 -15.05850 -14.74996 -14.46948 -13.95047 -13.77243 -12.96509 -12.47462 -12.13354 -11.81414 -11.70940 -11.28792 -10.93617 -10.88570 -10.49697 -10.33763 -10.28059 -10.02236 -9.81573 -9.60176 -9.07175 -8.83493 -8.37053 -7.35481 -5.97724 -3.99533 3.34644 3.40884 3.44351 4.48324 4.80220 5.18960 5.23198 5.30004 5.36852 5.69124 5.86781 5.90726 5.97048 6.07363 6.18717 6.22490 6.25895 6.42653 6.49022 6.56168 6.67653 6.72804 6.95391 7.08647 7.19197 7.54848 7.77081 7.91800 8.07285 8.30825 8.51551 9.03102 9.63872 11.12248 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.061968 B = 0.009923 C = 0.009398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.734663 B = 2821.135742 C = 2978.618939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.044 3.956 10 H 0.029 0.971 11 C -0.109 4.109 12 C 0.064 3.936 13 H 0.038 0.962 14 C -0.103 4.103 15 C -0.117 4.117 16 C -0.112 4.112 17 C 0.060 3.940 18 N -0.538 5.538 19 C 0.078 3.922 20 H 0.259 0.741 21 H 0.047 0.953 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 -9.613 -4.072 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.025 3.975 10 H 0.048 0.952 11 C -0.147 4.147 12 C -0.044 4.044 13 H 0.056 0.944 14 C -0.141 4.141 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.069 4.069 18 N -0.264 5.264 19 C -0.049 4.049 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 1.887 -9.284 -4.411 10.451 hybrid contribution -0.451 0.703 0.393 0.923 sum 1.436 -8.581 -4.018 9.583 Atomic orbital electron populations 1.69973 1.05903 1.26482 1.50898 1.25008 0.94856 0.99114 0.95250 0.86608 0.79859 0.83549 0.78071 1.20713 1.21376 1.19929 1.21167 0.92823 0.90132 1.49984 0.92474 1.19744 0.92608 0.92525 0.92630 0.95239 1.22477 0.99979 0.96085 0.96150 1.22524 0.96209 0.93456 0.92256 0.94368 1.21502 0.98089 0.96984 0.97550 1.21576 0.98824 0.97634 0.97422 1.21598 0.99038 0.96680 0.97693 1.21861 0.93705 0.95051 0.96253 1.62848 1.37128 1.07638 1.18776 1.22658 0.94452 0.90946 0.96835 0.93092 0.93420 0.91591 0.91082 0.92464 0.92680 0.93005 0.92651 0.91535 0.96116 0.91595 0.90361 0.97246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 12.52 55.43 0.69 -25.37 16 2 C 0.06 1.66 5.11 -17.82 -0.09 1.56 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.50 -14.05 8.37 -34.44 -0.29 -14.34 16 8 H 0.06 1.58 7.57 -52.49 -0.40 1.18 16 9 C 0.04 1.13 2.90 -89.58 -0.26 0.87 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.34 6.13 -25.01 -0.15 -2.49 16 12 C 0.06 1.22 2.63 -66.58 -0.17 1.05 16 13 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 14 C -0.10 -1.63 5.68 -26.73 -0.15 -1.79 16 15 C -0.12 -1.62 5.94 -26.43 -0.16 -1.78 16 16 C -0.11 -1.63 6.07 -26.43 -0.16 -1.79 16 17 C 0.06 1.06 5.84 -4.23 -0.02 1.04 16 18 N -0.54 -11.31 4.65 -225.06 -1.05 -12.36 16 19 C 0.08 1.93 5.78 -3.18 -0.02 1.91 16 20 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 21 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.07 1.44 7.68 -51.93 -0.40 1.04 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.02 0.36 8.04 -51.93 -0.42 -0.05 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 2.15 7.29 -51.93 -0.38 1.78 16 32 H 0.01 0.23 8.04 -51.93 -0.42 -0.18 16 LS Contribution 250.77 15.07 3.78 3.78 Total: -1.00 -28.65 250.77 -8.44 -37.09 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -5.37 Total: -3.99 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.48 Total: -15.76 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.35 Total: -37.72 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.65 -8.44 -37.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260939499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.386 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds