Wall clock time and date at job start Mon Mar 30 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00156 * 2 1 4 4 H 1.48500 * 109.46590 * 270.00083 * 3 2 1 5 5 H 1.48505 * 109.46852 * 29.99469 * 3 2 1 6 6 H 1.48496 * 109.47351 * 149.99937 * 3 2 1 7 7 C 1.37875 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99672 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.30168 * 302.16113 * 9 7 2 11 11 C 1.55336 * 110.33555 * 179.97438 * 9 7 2 12 12 C 1.53926 * 102.08612 * 218.92064 * 11 9 7 13 13 H 1.08997 * 111.00205 * 281.34403 * 12 11 9 14 14 C 1.52358 * 113.27111 * 155.08877 * 12 11 9 15 15 C 1.53642 * 107.59203 * 185.05678 * 14 12 11 16 16 C 1.52943 * 110.64041 * 56.40638 * 15 14 12 17 17 C 1.53634 * 110.58458 * 306.17130 * 16 15 14 18 18 N 1.45537 * 107.90737 * 57.10517 * 17 16 15 19 19 C 1.46334 * 117.21158 * 174.43695 * 18 17 16 20 20 H 0.97001 * 119.99712 * 0.02562 * 1 2 3 21 21 H 1.09001 * 110.90472 * 100.72944 * 11 9 7 22 22 H 1.08994 * 110.90860 * 337.12037 * 11 9 7 23 23 H 1.09001 * 109.83649 * 304.57060 * 14 12 11 24 24 H 1.08997 * 109.83723 * 65.46505 * 14 12 11 25 25 H 1.09004 * 109.24679 * 176.70142 * 15 14 12 26 26 H 1.09006 * 109.24691 * 296.15401 * 15 14 12 27 27 H 1.09004 * 109.31766 * 185.85659 * 16 15 14 28 28 H 1.09003 * 109.22802 * 66.42651 * 16 15 14 29 29 H 1.09002 * 109.78391 * 297.48624 * 17 16 15 30 30 H 1.09002 * 109.78301 * 176.72534 * 17 16 15 31 31 H 1.09005 * 110.15725 * 271.04291 * 19 18 17 32 32 H 1.09003 * 110.15179 * 32.79316 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.5910 -2.5539 0.8674 11 6 2.2425 -3.6949 0.0015 12 6 1.5460 -4.6909 -0.9431 13 1 0.7373 -5.2135 -0.4324 14 6 2.5100 -5.6676 -1.6049 15 6 1.7040 -6.5084 -2.6070 16 6 0.9895 -5.6072 -3.6151 17 6 0.1392 -4.5531 -2.8897 18 7 1.0180 -3.7985 -2.0085 19 6 0.4386 -2.6524 -1.3070 20 1 -0.4850 0.8401 -0.0004 21 1 2.3456 -4.1149 1.0020 22 1 3.2126 -3.3958 -0.3953 23 1 3.2922 -5.1179 -2.1285 24 1 2.9554 -6.3160 -0.8505 25 1 2.3796 -7.1780 -3.1394 26 1 0.9641 -7.0994 -2.0670 27 1 0.3439 -6.2157 -4.2486 28 1 1.7311 -5.1051 -4.2364 29 1 -0.6371 -5.0450 -2.3036 30 1 -0.3174 -3.8827 -3.6178 31 1 0.5330 -1.7528 -1.9152 32 1 -0.6099 -2.8432 -1.0780 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260939499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:03 Heat of formation + Delta-G solvation = -30.385680 kcal Electronic energy + Delta-G solvation = -12830.150708 eV Core-core repulsion = 10788.795169 eV Total energy + Delta-G solvation = -2041.355539 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.62889 -36.34493 -34.16162 -33.02989 -30.33098 -27.90426 -26.56237 -23.62523 -22.28504 -21.33694 -20.60121 -18.25474 -16.75023 -16.50172 -16.17426 -15.42684 -15.14502 -14.49317 -14.25473 -13.62598 -13.53497 -13.42794 -12.90887 -12.79584 -12.61767 -12.33804 -11.94414 -11.70600 -11.53722 -11.46322 -11.11131 -10.92309 -10.81919 -10.52969 -9.07099 -8.14318 -6.23670 1.41127 1.41985 1.52450 2.43356 3.15785 3.23850 3.90011 3.93872 4.09929 4.29302 4.44711 4.47520 4.54397 4.61363 4.64426 4.79756 4.91691 5.04429 5.09434 5.12885 5.21435 5.27843 5.31330 5.38374 5.54972 5.60453 5.74535 5.77694 6.25763 6.39166 6.60297 6.86669 7.43565 8.95493 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.061968 B = 0.009923 C = 0.009398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.734663 B = 2821.135742 C = 2978.618939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.032 3.968 10 H -0.002 1.002 11 C -0.102 4.102 12 C 0.067 3.933 13 H 0.039 0.961 14 C -0.099 4.099 15 C -0.114 4.114 16 C -0.106 4.106 17 C 0.053 3.947 18 N -0.548 5.548 19 C 0.096 3.904 20 H 0.261 0.739 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.022 0.978 30 H 0.061 0.939 31 H 0.042 0.958 32 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -11.048 -4.803 12.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.074 0.926 9 C 0.013 3.987 10 H 0.016 0.984 11 C -0.140 4.140 12 C -0.040 4.040 13 H 0.057 0.943 14 C -0.137 4.137 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.075 4.075 18 N -0.273 5.273 19 C -0.033 4.033 20 H 0.069 0.931 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 3.041 -10.742 -5.147 12.293 hybrid contribution -0.846 1.136 0.633 1.552 sum 2.196 -9.606 -4.513 10.838 Atomic orbital electron populations 1.70100 1.07376 1.27319 1.51593 1.25821 0.95696 1.02669 0.94810 0.85562 0.78801 0.79152 0.78195 1.20268 1.20882 1.18960 1.21491 0.92940 0.91474 1.50061 0.92630 1.19743 0.93219 0.93903 0.91796 0.98412 1.22392 0.98680 0.95053 0.97867 1.22588 0.96693 0.93310 0.91457 0.94334 1.21496 0.97191 0.96527 0.98439 1.21583 0.99234 0.97426 0.96896 1.21590 0.98953 0.96019 0.97822 1.22049 0.94108 0.95620 0.95709 1.62819 1.37591 1.07679 1.19244 1.22198 0.93429 0.91493 0.96135 0.93061 0.91874 0.92032 0.91862 0.90100 0.89777 0.92087 0.89711 0.91917 0.95974 0.92056 0.93982 0.99067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.51 12.52 21.45 0.27 -55.24 16 2 C 0.01 0.47 5.11 84.65 0.43 0.91 16 3 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.52 -29.83 8.37 25.60 0.21 -29.61 16 8 H 0.06 3.11 7.57 -2.91 -0.02 3.09 16 9 C 0.03 1.72 2.90 -10.12 -0.03 1.69 16 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 11 C -0.10 -4.35 6.13 31.71 0.19 -4.16 16 12 C 0.07 2.50 2.63 44.67 0.12 2.62 16 13 H 0.04 1.44 8.06 -2.39 -0.02 1.42 16 14 C -0.10 -2.81 5.68 30.60 0.17 -2.64 16 15 C -0.11 -2.67 5.94 30.79 0.18 -2.49 16 16 C -0.11 -2.74 6.07 30.79 0.19 -2.56 16 17 C 0.05 1.82 5.84 86.77 0.51 2.33 16 18 N -0.55 -22.93 4.65 -865.95 -4.03 -26.96 16 19 C 0.10 4.90 5.78 87.02 0.50 5.40 16 20 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 21 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 22 H 0.06 2.66 7.68 -2.39 -0.02 2.64 16 23 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.02 0.75 8.04 -2.39 -0.02 0.73 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 2.42 7.29 -2.38 -0.02 2.40 16 32 H -0.01 -0.48 8.04 -2.39 -0.02 -0.50 16 Total: -1.00 -62.82 250.77 1.81 -61.01 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 1.06 Total: 2.83 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 2.48 Total: -28.51 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -3.76 Total: -82.21 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -62.82 1.81 -61.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260939499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.621 kcal (2) G-P(sol) polarization free energy of solvation -62.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds