Wall clock time and date at job start Mon Mar 30 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99693 * 2 1 4 4 H 1.48503 * 109.47209 * 239.99732 * 3 2 1 5 5 H 1.48505 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47332 * 119.99534 * 3 2 1 7 7 C 1.37874 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99751 * 186.67912 * 7 2 1 9 9 C 1.50694 * 119.99757 * 6.67650 * 7 2 1 10 10 C 1.53002 * 108.82054 * 297.95972 * 9 7 2 11 11 N 1.46900 * 109.47036 * 305.31449 * 10 9 7 12 12 C 1.51413 * 108.84419 * 179.48265 * 9 7 2 13 13 C 1.51272 * 112.84800 * 286.05607 * 12 9 7 14 14 C 1.51421 * 112.83789 * 296.97700 * 13 12 9 15 15 C 1.52125 * 112.27390 * 46.48895 * 14 13 12 16 16 H 1.09001 * 115.25418 * 129.96137 * 15 14 13 17 17 C 1.53688 * 116.28846 * 272.29297 * 15 14 13 18 18 C 1.51442 * 108.84307 * 56.43976 * 9 7 2 19 19 H 1.09003 * 114.52594 * 317.02461 * 18 9 7 20 20 H 0.96997 * 120.00537 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47071 * 65.30752 * 10 9 7 22 22 H 1.08994 * 109.47703 * 185.31336 * 10 9 7 23 23 H 1.00893 * 111.00307 * 174.45712 * 11 10 9 24 24 H 1.00901 * 110.99699 * 298.41541 * 11 10 9 25 25 H 1.09004 * 108.80438 * 46.91807 * 12 9 7 26 26 H 1.09001 * 108.81106 * 165.28827 * 12 9 7 27 27 H 1.09001 * 108.81444 * 57.84328 * 13 12 9 28 28 H 1.08996 * 108.80952 * 176.22451 * 13 12 9 29 29 H 1.09007 * 108.92144 * 167.20995 * 14 13 12 30 30 H 1.09003 * 108.92110 * 285.85746 * 14 13 12 31 31 H 1.09006 * 117.53941 * 219.09740 * 17 15 14 32 32 H 1.08996 * 117.54214 * 4.28117 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0791 -1.1970 0.1093 9 6 1.2588 -2.4947 -0.1506 10 6 0.2997 -2.6539 1.0308 11 7 1.0485 -2.5345 2.2889 12 6 2.2548 -3.6349 -0.1289 13 6 3.0538 -3.7413 -1.4090 14 6 2.1919 -4.0456 -2.6162 15 6 0.9496 -3.1693 -2.6733 16 1 0.7733 -2.6742 -3.6282 17 6 -0.2852 -3.6892 -1.9203 18 6 0.4531 -2.4505 -1.4322 19 1 -0.0637 -1.5073 -1.6094 20 1 -0.4851 0.8400 -0.0004 21 1 -0.4631 -1.8765 0.9869 22 1 -0.1764 -3.6332 0.9829 23 1 0.4259 -2.5457 3.0828 24 1 1.7451 -3.2605 2.3654 25 1 2.9427 -3.4847 0.7032 26 1 1.7158 -4.5696 0.0259 27 1 3.5747 -2.7988 -1.5777 28 1 3.7922 -4.5352 -1.2974 29 1 2.7798 -3.8846 -3.5199 30 1 1.8843 -5.0905 -2.5766 31 1 -1.2589 -3.5449 -2.3887 32 1 -0.1732 -4.6052 -1.3403 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260941560.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:20 Heat of formation + Delta-G solvation = -2.460587 kcal Electronic energy + Delta-G solvation = -13254.206536 eV Core-core repulsion = 11214.061920 eV Total energy + Delta-G solvation = -2040.144616 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57705 -36.08198 -34.00552 -33.50350 -30.95066 -27.13348 -25.76003 -23.38074 -23.05562 -20.97344 -19.43277 -17.27709 -16.93231 -16.62389 -15.96011 -15.22936 -14.98945 -14.41764 -14.22373 -13.77191 -13.55736 -13.24813 -12.70516 -12.55663 -12.18024 -12.09767 -11.92391 -11.74733 -11.41312 -10.95726 -10.60202 -10.44216 -10.03444 -10.00035 -8.97459 -7.81452 -5.87933 1.46967 1.48045 1.53134 2.58207 3.23363 3.44574 4.07109 4.16347 4.27053 4.30272 4.56038 4.58481 4.66812 4.81908 4.92540 4.99557 5.07154 5.11818 5.24949 5.26231 5.38407 5.52522 5.57492 5.66219 5.84562 5.98924 6.01130 6.35860 6.55915 6.85927 7.05725 7.14444 7.73415 9.17819 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.016208 C = 0.014730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.414263 B = 1727.127968 C = 1900.400376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 0.929 3.071 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.466 4.466 8 H 0.037 0.963 9 C 0.098 3.902 10 C 0.088 3.912 11 N -0.834 5.834 12 C -0.093 4.093 13 C -0.107 4.107 14 C -0.075 4.075 15 C -0.158 4.158 16 H 0.086 0.914 17 C -0.193 4.193 18 C -0.106 4.106 19 H 0.080 0.920 20 H 0.249 0.751 21 H 0.067 0.933 22 H -0.018 1.018 23 H 0.327 0.673 24 H 0.328 0.672 25 H 0.048 0.952 26 H 0.036 0.964 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 -7.589 -2.104 8.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.504 4.504 8 H 0.056 0.944 9 C 0.097 3.903 10 C -0.043 4.043 11 N -0.362 5.362 12 C -0.131 4.131 13 C -0.145 4.145 14 C -0.112 4.112 15 C -0.176 4.176 16 H 0.104 0.896 17 C -0.230 4.230 18 C -0.126 4.126 19 H 0.098 0.902 20 H 0.059 0.941 21 H 0.086 0.914 22 H 0.000 1.000 23 H 0.138 0.862 24 H 0.141 0.859 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.133 -6.744 -2.386 7.465 hybrid contribution -0.264 0.395 0.314 0.569 sum 1.869 -6.349 -2.072 6.935 Atomic orbital electron populations 1.69926 1.06345 1.25545 1.53099 1.25285 0.95269 1.00618 0.95895 0.86089 0.78640 0.81571 0.77940 1.20602 1.21944 1.20794 1.20997 0.92151 0.91170 1.46094 0.94423 1.17017 0.91142 0.93013 0.89089 1.21729 0.96747 0.95314 0.90506 1.58467 1.18951 1.55247 1.03554 1.20800 0.97937 0.97050 0.97317 1.20716 0.98058 1.00812 0.94886 1.20494 0.94354 0.98166 0.98171 1.22047 0.95642 1.03539 0.96409 0.89566 1.23008 0.95410 0.99339 1.05230 1.21644 1.00420 0.94963 0.95537 0.90187 0.94138 0.91429 1.00036 0.86206 0.85917 0.93329 0.94548 0.93861 0.91321 0.91175 0.91528 0.90061 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.97 9.43 21.45 0.20 -50.77 16 2 C 0.03 1.44 5.01 84.65 0.42 1.87 16 3 Si 0.93 44.77 29.54 68.60 2.03 46.80 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.47 -24.70 6.80 25.60 0.17 -24.53 16 8 H 0.04 2.05 7.68 -2.91 -0.02 2.03 16 9 C 0.10 4.55 0.30 -53.96 -0.02 4.54 16 10 C 0.09 4.07 5.24 86.30 0.45 4.52 16 11 N -0.83 -34.94 8.95 -186.72 -1.67 -36.61 16 12 C -0.09 -3.70 3.61 29.51 0.11 -3.59 16 13 C -0.11 -3.79 5.67 29.51 0.17 -3.62 16 14 C -0.07 -2.43 5.84 29.79 0.17 -2.26 16 15 C -0.16 -6.06 6.19 -11.25 -0.07 -6.13 16 16 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 17 C -0.19 -7.35 9.65 30.57 0.30 -7.06 16 18 C -0.11 -4.88 4.11 -11.96 -0.05 -4.93 16 19 H 0.08 4.30 6.15 -2.39 -0.01 4.28 16 20 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 21 H 0.07 3.62 6.09 -2.39 -0.01 3.60 16 22 H -0.02 -0.80 8.04 -2.39 -0.02 -0.82 16 23 H 0.33 12.13 9.08 -89.70 -0.81 11.31 16 24 H 0.33 12.33 7.61 -89.69 -0.68 11.64 16 25 H 0.05 1.94 7.14 -2.38 -0.02 1.92 16 26 H 0.04 1.33 7.70 -2.39 -0.02 1.31 16 27 H 0.04 1.70 7.70 -2.39 -0.02 1.68 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.07 1.93 8.07 -2.39 -0.02 1.91 16 31 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 32 H 0.09 3.11 7.87 -2.39 -0.02 3.09 16 Total: -1.00 -57.39 245.65 1.83 -55.56 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.39 Total: 26.22 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 1.66 Total: -41.20 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -1.47 Total: -87.38 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -57.39 1.83 -55.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260941560.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.098 kcal (2) G-P(sol) polarization free energy of solvation -57.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds