Wall clock time and date at job start Mon Mar 30 2020 03:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99871 * 2 1 4 4 H 1.48505 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47334 * 300.00048 * 3 2 1 6 6 H 1.48499 * 109.47179 * 60.00299 * 3 2 1 7 7 C 1.37882 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00161 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99841 * 0.27091 * 7 2 1 10 10 C 1.52995 * 109.46830 * 179.73104 * 9 7 2 11 11 H 1.08993 * 109.87918 * 306.39872 * 10 9 7 12 12 C 1.54321 * 109.88611 * 185.37260 * 10 9 7 13 13 C 1.55400 * 102.90128 * 218.40640 * 12 10 9 14 14 C 1.54912 * 101.73954 * 35.47887 * 13 12 10 15 15 N 1.47441 * 109.89112 * 67.43692 * 10 9 7 16 16 C 1.46896 * 111.00002 * 356.14749 * 15 10 9 17 17 C 1.53005 * 117.49655 * 254.49867 * 16 15 10 18 18 C 1.52999 * 117.49959 * 185.84256 * 16 15 10 19 19 H 0.96992 * 120.00172 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46685 * 299.72716 * 9 7 2 21 21 H 1.08993 * 109.47032 * 59.72734 * 9 7 2 22 22 H 1.09001 * 110.70747 * 336.69082 * 12 10 9 23 23 H 1.09007 * 110.70738 * 99.92303 * 12 10 9 24 24 H 1.08997 * 110.86914 * 277.39346 * 13 12 10 25 25 H 1.08998 * 111.05862 * 153.65316 * 13 12 10 26 26 H 1.08998 * 110.36817 * 204.19143 * 14 13 12 27 27 H 1.08994 * 110.46455 * 81.89576 * 14 13 12 28 28 H 1.09000 * 115.55421 * 40.16599 * 16 15 10 29 29 H 1.09005 * 117.49967 * 0.02562 * 17 16 15 30 30 H 1.08996 * 117.49848 * 145.01910 * 17 16 15 31 31 H 1.08998 * 117.50435 * 214.98123 * 18 16 15 32 32 H 1.09002 * 117.49516 * 359.97202 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0073 10 6 2.2454 -3.6620 -0.0133 11 1 2.9486 -3.5441 -0.8377 12 6 1.4884 -4.9992 -0.1561 13 6 2.2822 -5.9492 0.7832 14 6 2.6851 -4.9919 1.9325 15 7 2.9757 -3.7041 1.2669 16 6 2.6007 -2.5719 2.1244 17 6 3.6092 -1.4303 2.2683 18 6 3.3704 -2.3926 3.4345 19 1 -0.4850 0.8400 0.0004 20 1 0.6245 -2.5615 0.8825 21 1 0.6245 -2.5523 -0.8975 22 1 0.4574 -4.8965 0.1824 23 1 1.5235 -5.3538 -1.1862 24 1 3.1631 -6.3467 0.2792 25 1 1.6482 -6.7559 1.1511 26 1 3.5734 -5.3643 2.4427 27 1 1.8629 -4.8770 2.6387 28 1 1.5423 -2.3112 2.1228 29 1 4.5507 -1.5192 1.7263 30 1 3.2143 -0.4187 2.3617 31 1 2.8186 -2.0138 4.2947 32 1 4.1548 -3.1151 3.6602 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260944861.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:24 Heat of formation + Delta-G solvation = 32.415249 kcal Electronic energy + Delta-G solvation = -13008.127746 eV Core-core repulsion = 10969.495460 eV Total energy + Delta-G solvation = -2038.632286 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.92357 -35.13803 -33.02798 -30.27089 -29.28186 -26.01995 -22.77029 -21.55380 -21.47239 -20.25452 -17.96743 -16.28781 -15.86563 -15.26291 -14.37864 -13.85166 -13.21991 -12.90318 -12.69193 -11.72401 -11.46514 -11.34021 -11.29728 -10.99375 -10.73026 -10.58679 -10.39098 -10.30369 -9.90789 -9.74242 -9.15274 -8.96262 -8.82429 -8.29292 -7.35228 -5.95525 -3.91479 3.32082 3.41254 3.45788 4.49426 4.68971 4.75901 5.22940 5.37227 5.39969 5.49436 5.88963 5.94769 5.98870 6.09346 6.20968 6.26605 6.31306 6.33257 6.41747 6.55967 6.72039 6.85194 6.88525 7.02171 7.08332 7.52551 7.71647 7.94046 8.06218 8.12327 8.46815 9.11273 9.67778 11.16447 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041213 B = 0.013794 C = 0.011315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.229687 B = 2029.421332 C = 2473.921415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.494 4.494 8 H 0.066 0.934 9 C 0.007 3.993 10 C 0.079 3.921 11 H 0.072 0.928 12 C -0.140 4.140 13 C -0.130 4.130 14 C 0.046 3.954 15 N -0.499 5.499 16 C 0.045 3.955 17 C -0.131 4.131 18 C -0.211 4.211 19 H 0.257 0.743 20 H 0.020 0.980 21 H 0.019 0.981 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.089 -7.434 3.519 9.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.146 4.146 3 Si 0.709 3.291 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.532 4.532 8 H 0.085 0.915 9 C -0.030 4.030 10 C -0.029 4.029 11 H 0.090 0.910 12 C -0.179 4.179 13 C -0.168 4.168 14 C -0.082 4.082 15 N -0.224 5.224 16 C -0.063 4.063 17 C -0.169 4.169 18 C -0.248 4.248 19 H 0.067 0.933 20 H 0.038 0.962 21 H 0.037 0.963 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.486 -7.267 3.420 9.199 hybrid contribution -0.495 1.002 0.107 1.123 sum 3.990 -6.265 3.528 8.223 Atomic orbital electron populations 1.69967 1.06002 1.26203 1.52010 1.24944 0.94655 0.98880 0.96091 0.86703 0.80531 0.84412 0.77455 1.19435 1.21343 1.21211 1.21321 0.93538 0.90108 1.48253 0.91543 1.19631 0.93956 0.92200 0.97250 1.22498 0.94875 0.94383 0.91119 0.91007 1.22969 0.99410 0.96309 0.99169 1.22725 0.99732 0.97361 0.97000 1.22889 0.98969 0.90281 0.96031 1.63446 1.55306 1.00201 1.03442 1.22415 0.97157 0.93932 0.92837 1.22706 1.00486 0.94859 0.98814 1.23249 1.04216 1.04629 0.92754 0.93305 0.96226 0.96280 0.91784 0.91756 0.91432 0.91887 0.91593 0.94180 0.87330 0.89695 0.89557 0.90138 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 3 Si 0.88 21.49 29.37 -169.99 -4.99 16.50 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.49 -13.25 5.82 -34.44 -0.20 -13.45 16 8 H 0.07 1.79 6.22 -52.49 -0.33 1.46 16 9 C 0.01 0.17 3.81 -27.88 -0.11 0.07 16 10 C 0.08 1.66 3.38 -66.73 -0.23 1.43 16 11 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 12 C -0.14 -2.44 6.49 -24.77 -0.16 -2.60 16 13 C -0.13 -1.95 7.08 -24.45 -0.17 -2.13 16 14 C 0.05 0.77 6.43 -2.30 -0.01 0.76 16 15 N -0.50 -9.99 5.31 -215.45 -1.14 -11.14 16 16 C 0.05 0.95 2.97 -67.71 -0.20 0.75 16 17 C -0.13 -2.69 7.80 -26.69 -0.21 -2.90 16 18 C -0.21 -3.79 10.10 -26.70 -0.27 -4.06 16 19 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 20 H 0.02 0.53 6.13 -51.93 -0.32 0.21 16 21 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 1.15 7.85 -51.93 -0.41 0.74 16 23 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.04 0.68 7.81 -51.93 -0.41 0.27 16 28 H 0.11 2.63 5.29 -51.93 -0.27 2.35 16 29 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.09 1.87 7.93 -51.93 -0.41 1.45 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 251.46 15.07 3.79 3.79 Total: -1.00 -28.35 251.46 -8.35 -36.70 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.08 Total: 0.74 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.66 Total: -20.73 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.41 Total: -37.00 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.99 Total: 16.50 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.35 -8.35 -36.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944861.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.117 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds