Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00274 * 2 1 4 4 H 1.48504 * 109.47223 * 269.99614 * 3 2 1 5 5 H 1.48503 * 109.47443 * 29.99511 * 3 2 1 6 6 H 1.48503 * 109.47402 * 149.99540 * 3 2 1 7 7 C 1.37881 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99703 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00364 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47540 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.87563 * 53.59637 * 10 9 7 12 12 C 1.54317 * 110.02371 * 174.72004 * 10 9 7 13 13 C 1.55137 * 103.01600 * 141.76654 * 12 10 9 14 14 C 1.54904 * 101.65462 * 324.34474 * 13 12 10 15 15 N 1.47448 * 109.88738 * 292.57324 * 10 9 7 16 16 C 1.46896 * 110.99889 * 3.68214 * 15 10 9 17 17 C 1.52998 * 117.50022 * 174.17407 * 16 15 10 18 18 C 1.52995 * 60.00284 * 252.51339 * 17 16 15 19 19 H 0.96999 * 119.99914 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.46923 * 59.99610 * 9 7 2 21 21 H 1.09001 * 109.47155 * 300.00446 * 9 7 2 22 22 H 1.09004 * 110.70315 * 260.14293 * 12 10 9 23 23 H 1.08993 * 110.70425 * 23.38178 * 12 10 9 24 24 H 1.09008 * 110.99295 * 82.43638 * 13 12 10 25 25 H 1.09001 * 110.98744 * 206.21143 * 13 12 10 26 26 H 1.09007 * 110.37153 * 278.24162 * 14 13 12 27 27 H 1.09000 * 110.37508 * 155.90434 * 14 13 12 28 28 H 1.09003 * 115.56662 * 319.86829 * 16 15 10 29 29 H 1.08994 * 117.50019 * 145.02135 * 17 16 15 30 30 H 1.09007 * 117.49381 * 0.02562 * 17 16 15 31 31 H 1.09007 * 117.49710 * 107.48583 * 18 17 16 32 32 H 1.08996 * 117.50210 * 252.50686 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 1 2.9483 -3.5486 0.8256 12 6 1.4910 -5.0020 0.1340 13 6 2.2873 -5.9461 -0.8047 14 6 2.6880 -4.9835 -1.9503 15 7 2.9756 -3.6976 -1.2798 16 6 2.5978 -2.5631 -2.1330 17 6 3.3668 -2.3770 -3.4425 18 6 3.6040 -1.4190 -2.2734 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6239 -2.5567 0.8903 22 1 1.5247 -5.3624 1.1621 23 1 0.4605 -4.8997 -0.2061 24 1 3.1693 -6.3435 -0.3022 25 1 1.6548 -6.7529 -1.1750 26 1 1.8641 -4.8683 -2.6547 27 1 3.5771 -5.3518 -2.4620 28 1 1.5389 -2.3044 -2.1301 29 1 2.8139 -1.9961 -4.3011 30 1 4.1529 -3.0968 -3.6711 31 1 4.5462 -1.5083 -1.7327 32 1 3.2071 -0.4078 -2.3628 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260944864.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = 32.345861 kcal Electronic energy + Delta-G solvation = -13009.236556 eV Core-core repulsion = 10970.601260 eV Total energy + Delta-G solvation = -2038.635295 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.93189 -35.14992 -33.02817 -30.27358 -29.28625 -26.01677 -22.76925 -21.55520 -21.47299 -20.25005 -17.96863 -16.29016 -15.86173 -15.26620 -14.38843 -13.85584 -13.22497 -12.90280 -12.68552 -11.71935 -11.46730 -11.35415 -11.29409 -11.00736 -10.70964 -10.56408 -10.42596 -10.29728 -9.90524 -9.74256 -9.15513 -8.96498 -8.82993 -8.29061 -7.35239 -5.95294 -3.91267 3.33056 3.40831 3.44704 4.49369 4.68999 4.75949 5.22703 5.37846 5.40142 5.49251 5.89183 5.94806 5.98888 6.09353 6.20939 6.26600 6.31201 6.33130 6.41801 6.56039 6.71940 6.84929 6.88528 7.02355 7.08232 7.52565 7.71662 7.93978 8.06311 8.12286 8.46936 9.11083 9.67856 11.16659 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041260 B = 0.013797 C = 0.011321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.452546 B = 2028.911740 C = 2472.756148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.882 3.118 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.494 4.494 8 H 0.066 0.934 9 C 0.007 3.993 10 C 0.079 3.921 11 H 0.072 0.928 12 C -0.140 4.140 13 C -0.130 4.130 14 C 0.046 3.954 15 N -0.500 5.500 16 C 0.045 3.955 17 C -0.210 4.210 18 C -0.132 4.132 19 H 0.258 0.742 20 H 0.020 0.980 21 H 0.019 0.981 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 -7.400 -3.553 9.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.146 4.146 3 Si 0.711 3.289 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.533 4.533 8 H 0.084 0.916 9 C -0.030 4.030 10 C -0.029 4.029 11 H 0.090 0.910 12 C -0.179 4.179 13 C -0.168 4.168 14 C -0.082 4.082 15 N -0.224 5.224 16 C -0.063 4.063 17 C -0.248 4.248 18 C -0.170 4.170 19 H 0.067 0.933 20 H 0.038 0.962 21 H 0.037 0.963 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.453 -7.230 -3.449 9.165 hybrid contribution -0.476 0.993 -0.124 1.108 sum 3.977 -6.237 -3.573 8.215 Atomic orbital electron populations 1.69959 1.05997 1.26308 1.51918 1.24940 0.94659 0.98866 0.96087 0.86744 0.80041 0.84063 0.78085 1.20692 1.21597 1.19809 1.21278 0.93487 0.90120 1.48382 0.91621 1.19621 0.93945 0.92166 0.97247 1.22504 0.94887 0.94352 0.91120 0.91007 1.22921 0.99414 0.96341 0.99195 1.22684 0.99731 0.97361 0.97048 1.22893 0.98974 0.90273 0.96033 1.63448 1.55306 1.00206 1.03450 1.22411 0.97143 0.93874 0.92906 1.23234 1.04195 1.04653 0.92737 1.22708 1.00494 0.94974 0.98821 0.93251 0.96232 0.96279 0.91782 0.91779 0.91416 0.91886 0.94185 0.91582 0.87341 0.90149 0.90019 0.89692 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.88 21.53 29.33 -169.99 -4.99 16.54 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.49 -13.27 5.82 -34.44 -0.20 -13.47 16 8 H 0.07 1.77 6.24 -52.48 -0.33 1.44 16 9 C 0.01 0.19 3.83 -27.88 -0.11 0.08 16 10 C 0.08 1.66 3.38 -66.72 -0.23 1.43 16 11 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 12 C -0.14 -2.45 6.47 -24.91 -0.16 -2.61 16 13 C -0.13 -1.95 7.08 -24.60 -0.17 -2.13 16 14 C 0.05 0.77 6.43 -2.30 -0.01 0.76 16 15 N -0.50 -10.00 5.31 -215.44 -1.15 -11.14 16 16 C 0.05 0.95 2.97 -67.71 -0.20 0.75 16 17 C -0.21 -3.79 10.09 -26.73 -0.27 -4.06 16 18 C -0.13 -2.72 7.80 -26.73 -0.21 -2.93 16 19 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 20 H 0.02 0.53 6.12 -51.93 -0.32 0.21 16 21 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.06 1.15 7.86 -51.93 -0.41 0.74 16 24 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.68 7.81 -51.93 -0.41 0.27 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.11 2.63 5.30 -51.93 -0.28 2.35 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.37 8.14 -51.92 -0.42 0.94 16 31 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.09 1.90 7.89 -51.93 -0.41 1.49 16 LS Contribution 251.38 15.07 3.79 3.79 Total: -1.00 -28.30 251.38 -8.35 -36.65 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.08 Total: 0.78 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -1.66 Total: -20.76 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.41 Total: -37.00 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.99 Total: 16.54 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.30 -8.35 -36.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944864.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.994 kcal (2) G-P(sol) polarization free energy of solvation -28.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds