Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00274 * 2 1 4 4 H 1.48504 * 109.47223 * 269.99614 * 3 2 1 5 5 H 1.48503 * 109.47443 * 29.99511 * 3 2 1 6 6 H 1.48503 * 109.47402 * 149.99540 * 3 2 1 7 7 C 1.37881 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99703 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00364 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47540 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.87563 * 53.59637 * 10 9 7 12 12 C 1.54317 * 110.02371 * 174.72004 * 10 9 7 13 13 C 1.55137 * 103.01600 * 141.76654 * 12 10 9 14 14 C 1.54904 * 101.65462 * 324.34474 * 13 12 10 15 15 N 1.47448 * 109.88738 * 292.57324 * 10 9 7 16 16 C 1.46896 * 110.99889 * 3.68214 * 15 10 9 17 17 C 1.52998 * 117.50022 * 174.17407 * 16 15 10 18 18 C 1.52995 * 60.00284 * 252.51339 * 17 16 15 19 19 H 0.96999 * 119.99914 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.46923 * 59.99610 * 9 7 2 21 21 H 1.09001 * 109.47155 * 300.00446 * 9 7 2 22 22 H 1.09004 * 110.70315 * 260.14293 * 12 10 9 23 23 H 1.08993 * 110.70425 * 23.38178 * 12 10 9 24 24 H 1.09008 * 110.99295 * 82.43638 * 13 12 10 25 25 H 1.09001 * 110.98744 * 206.21143 * 13 12 10 26 26 H 1.09007 * 110.37153 * 278.24162 * 14 13 12 27 27 H 1.09000 * 110.37508 * 155.90434 * 14 13 12 28 28 H 1.09003 * 115.56662 * 319.86829 * 16 15 10 29 29 H 1.08994 * 117.50019 * 145.02135 * 17 16 15 30 30 H 1.09007 * 117.49381 * 0.02562 * 17 16 15 31 31 H 1.09007 * 117.49710 * 107.48583 * 18 17 16 32 32 H 1.08996 * 117.50210 * 252.50686 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 1 2.9483 -3.5486 0.8256 12 6 1.4910 -5.0020 0.1340 13 6 2.2873 -5.9461 -0.8047 14 6 2.6880 -4.9835 -1.9503 15 7 2.9756 -3.6976 -1.2798 16 6 2.5978 -2.5631 -2.1330 17 6 3.3668 -2.3770 -3.4425 18 6 3.6040 -1.4190 -2.2734 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6239 -2.5567 0.8903 22 1 1.5247 -5.3624 1.1621 23 1 0.4605 -4.8997 -0.2061 24 1 3.1693 -6.3435 -0.3022 25 1 1.6548 -6.7529 -1.1750 26 1 1.8641 -4.8683 -2.6547 27 1 3.5771 -5.3518 -2.4620 28 1 1.5389 -2.3044 -2.1301 29 1 2.8139 -1.9961 -4.3011 30 1 4.1529 -3.0968 -3.6711 31 1 4.5462 -1.5083 -1.7327 32 1 3.2071 -0.4078 -2.3628 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260944864.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = 14.648483 kcal Electronic energy + Delta-G solvation = -13010.003972 eV Core-core repulsion = 10970.601260 eV Total energy + Delta-G solvation = -2039.402711 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.50737 -36.68004 -35.08848 -32.08305 -30.77003 -27.85277 -24.64368 -23.14269 -23.09265 -21.63700 -19.65787 -18.33561 -17.56157 -16.84779 -16.28231 -15.39322 -14.77316 -14.54406 -14.37896 -13.51676 -13.30064 -12.98426 -12.93466 -12.79271 -12.32867 -12.18428 -12.06820 -11.81458 -11.67849 -11.41149 -10.91401 -10.84905 -10.60094 -10.38408 -8.97131 -8.12141 -6.13067 1.37850 1.39559 1.49364 2.44013 3.13345 3.16160 3.28227 3.89370 3.96868 4.15295 4.33467 4.44377 4.53260 4.68257 4.73944 4.78676 4.87533 4.98369 5.00673 5.10887 5.16463 5.17717 5.31111 5.38341 5.46649 5.52875 5.72869 5.87933 6.27706 6.40368 6.49418 6.95336 7.49369 9.00564 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041260 B = 0.013797 C = 0.011321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.452546 B = 2028.911740 C = 2472.756148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.003 3.997 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.488 4.488 8 H 0.065 0.935 9 C 0.017 3.983 10 C 0.080 3.920 11 H 0.061 0.939 12 C -0.138 4.138 13 C -0.116 4.116 14 C 0.041 3.959 15 N -0.501 5.501 16 C 0.028 3.972 17 C -0.171 4.171 18 C -0.146 4.146 19 H 0.257 0.743 20 H -0.003 1.003 21 H -0.011 1.011 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.035 0.965 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.700 -8.628 -4.374 11.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.527 4.527 8 H 0.083 0.917 9 C -0.021 4.021 10 C -0.028 4.028 11 H 0.080 0.920 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.086 4.086 15 N -0.226 5.226 16 C -0.081 4.081 17 C -0.208 4.208 18 C -0.184 4.184 19 H 0.066 0.934 20 H 0.015 0.985 21 H 0.007 0.993 22 H 0.098 0.902 23 H 0.071 0.929 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.107 -8.472 -4.275 11.285 hybrid contribution -1.000 1.349 0.119 1.683 sum 5.108 -7.123 -4.156 9.700 Atomic orbital electron populations 1.70088 1.07568 1.26984 1.53609 1.25676 0.95314 1.02227 0.96081 0.85804 0.78965 0.80097 0.78427 1.19792 1.21688 1.18954 1.21485 0.93401 0.90903 1.46888 0.91703 1.19483 0.94175 0.93830 0.94584 1.22349 0.93977 0.94621 0.91848 0.92040 1.22865 0.98682 0.95064 1.01054 1.22670 1.00268 0.96973 0.95495 1.23066 0.99979 0.88995 0.96570 1.63469 1.54713 1.01345 1.03046 1.22169 0.95265 0.94892 0.95811 1.23247 1.03180 1.02907 0.91504 1.22636 1.00276 0.94303 1.01197 0.93388 0.98529 0.99306 0.90206 0.92924 0.89829 0.89131 0.94605 0.89243 0.91368 0.88763 0.87649 0.89512 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.22 13.29 21.45 0.28 -56.93 16 2 C 0.00 0.17 5.46 84.66 0.46 0.64 16 3 Si 0.94 44.74 29.33 68.60 2.01 46.75 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.49 -26.83 5.82 25.60 0.15 -26.68 16 8 H 0.06 3.52 6.24 -2.91 -0.02 3.51 16 9 C 0.02 0.87 3.83 29.85 0.11 0.98 16 10 C 0.08 3.36 3.38 45.26 0.15 3.51 16 11 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 12 C -0.14 -4.64 6.47 31.77 0.21 -4.43 16 13 C -0.12 -3.08 7.08 31.98 0.23 -2.86 16 14 C 0.04 1.25 6.43 86.77 0.56 1.81 16 15 N -0.50 -19.41 5.31 -835.52 -4.44 -23.85 16 16 C 0.03 1.15 2.97 44.92 0.13 1.28 16 17 C -0.17 -5.75 10.09 30.59 0.31 -5.44 16 18 C -0.15 -5.91 7.80 30.59 0.24 -5.67 16 19 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 20 H 0.00 -0.19 6.12 -2.39 -0.01 -0.20 16 21 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 22 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 23 H 0.05 1.87 7.86 -2.39 -0.02 1.86 16 24 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.13 7.81 -2.38 -0.02 1.11 16 27 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.07 3.43 5.30 -2.39 -0.01 3.41 16 29 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.11 3.09 8.14 -2.38 -0.02 3.08 16 31 H 0.09 3.44 8.14 -2.38 -0.02 3.42 16 32 H 0.07 2.98 7.89 -2.39 -0.02 2.96 16 Total: -1.00 -61.83 251.38 1.48 -60.35 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.07 Total: 10.54 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 2.55 Total: -36.86 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -4.16 Total: -80.78 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.01 Total: 46.75 kcal Total: -61.83 1.48 -60.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944864.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.996 kcal (2) G-P(sol) polarization free energy of solvation -61.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds