Wall clock time and date at job start Mon Mar 30 2020 02:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00302 * 2 1 4 4 H 1.48492 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46886 * 300.00607 * 3 2 1 6 6 H 1.48506 * 109.46859 * 60.00089 * 3 2 1 7 7 C 1.37878 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00600 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99827 * 359.97438 * 7 2 1 10 10 H 1.09001 * 112.78495 * 310.81326 * 9 7 2 11 11 C 1.53508 * 113.47662 * 81.62113 * 9 7 2 12 12 C 1.53509 * 83.57637 * 140.78974 * 11 9 7 13 13 N 1.47476 * 113.47433 * 180.02562 * 9 7 2 14 14 C 1.46900 * 111.00060 * 106.52953 * 13 9 7 15 15 C 1.52994 * 109.47402 * 187.49214 * 14 13 9 16 16 C 1.53782 * 113.61734 * 184.99959 * 15 14 13 17 17 C 1.53781 * 87.08260 * 220.02231 * 16 15 14 18 18 C 1.53786 * 87.17350 * 25.39213 * 17 16 15 19 19 H 0.97000 * 120.00126 * 359.97438 * 1 2 3 20 20 H 1.09007 * 114.16918 * 27.14329 * 11 9 7 21 21 H 1.09001 * 114.34340 * 254.45057 * 11 9 7 22 22 H 1.08996 * 113.47349 * 219.20669 * 12 11 9 23 23 H 1.09004 * 113.52642 * 88.74816 * 12 11 9 24 24 H 1.09005 * 109.46682 * 67.49818 * 14 13 9 25 25 H 1.08998 * 109.47034 * 307.49864 * 14 13 9 26 26 H 1.09002 * 112.84929 * 316.20035 * 15 14 13 27 27 H 1.09001 * 113.61250 * 105.47049 * 16 15 14 28 28 H 1.08996 * 113.68722 * 334.58363 * 16 15 14 29 29 H 1.09002 * 113.61445 * 139.98212 * 17 16 15 30 30 H 1.09002 * 113.61408 * 270.79943 * 17 16 15 31 31 H 1.08993 * 113.61491 * 89.15923 * 18 17 16 32 32 H 1.09000 * 113.61138 * 220.06261 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.4714 -2.5365 0.7603 11 6 0.7670 -2.9259 -1.3934 12 6 1.1649 -4.3285 -0.9127 13 7 2.1288 -3.6843 -0.0005 14 6 2.1286 -4.3396 1.3142 15 6 3.1852 -5.4459 1.3329 16 6 3.1841 -6.2771 2.6267 17 6 4.7197 -6.2587 2.5468 18 6 4.5863 -4.9554 1.7414 19 1 -0.4850 0.8400 0.0004 20 1 1.3763 -2.5457 -2.2135 21 1 -0.3030 -2.7968 -1.5564 22 1 1.6368 -4.9347 -1.6858 23 1 0.3629 -4.8548 -0.3952 24 1 1.1463 -4.7722 1.5043 25 1 2.3578 -3.6051 2.0863 26 1 3.1815 -6.0501 0.4257 27 1 2.7525 -7.2708 2.5069 28 1 2.7853 -5.7437 3.4895 29 1 5.2057 -6.1267 3.5135 30 1 5.1371 -7.0860 1.9727 31 1 4.5715 -4.0588 2.3610 32 1 5.2850 -4.8837 0.9079 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:27 Heat of formation + Delta-G solvation = 44.964291 kcal Electronic energy + Delta-G solvation = -12429.139112 eV Core-core repulsion = 10391.050993 eV Total energy + Delta-G solvation = -2038.088119 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.18670 -37.75686 -32.46022 -29.98781 -26.62577 -25.44137 -25.08397 -22.67811 -21.49314 -19.00716 -18.55528 -16.49349 -15.54118 -14.75473 -14.65086 -14.12557 -13.89747 -13.05545 -12.38277 -12.13998 -11.87380 -11.67914 -11.27235 -10.96684 -10.66616 -10.51091 -10.39234 -10.26219 -10.13007 -9.97674 -9.60271 -9.34727 -8.86074 -8.35139 -7.66300 -6.00333 -4.01303 3.31930 3.39675 3.45534 4.44539 4.84645 4.94987 5.05000 5.15399 5.30240 5.48411 5.79023 5.83551 5.87838 5.99815 6.04616 6.07569 6.11543 6.21648 6.35834 6.42310 6.46890 6.63338 6.83795 6.88443 6.95878 7.15840 7.43932 7.48134 7.97277 8.33646 8.48059 9.05314 9.62618 11.09748 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.009544 C = 0.008364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.461705 B = 2933.032766 C = 3346.873536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.494 4.494 8 H 0.064 0.936 9 C 0.174 3.826 10 H 0.038 0.962 11 C -0.135 4.135 12 C -0.011 4.011 13 N -0.473 5.473 14 C 0.034 3.966 15 C -0.096 4.096 16 C -0.140 4.140 17 C -0.145 4.145 18 C -0.126 4.126 19 H 0.260 0.740 20 H 0.075 0.925 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.330 -9.508 2.780 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.533 4.533 8 H 0.082 0.918 9 C 0.067 3.933 10 H 0.056 0.944 11 C -0.173 4.173 12 C -0.141 4.141 13 N -0.196 5.196 14 C -0.095 4.095 15 C -0.114 4.114 16 C -0.178 4.178 17 C -0.183 4.183 18 C -0.163 4.163 19 H 0.069 0.931 20 H 0.094 0.906 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.902 -9.335 2.642 10.870 hybrid contribution -0.534 0.766 0.343 0.995 sum 4.368 -8.569 2.985 10.071 Atomic orbital electron populations 1.69973 1.05975 1.26527 1.50962 1.24990 0.94849 0.99182 0.95194 0.86490 0.80233 0.83535 0.77474 1.19636 1.21038 1.21130 1.21011 0.93384 0.89310 1.49554 0.91796 1.20807 0.90467 0.89377 0.92627 0.94403 1.23141 0.99478 0.93549 1.01166 1.23828 0.94780 0.97711 0.97769 1.68963 1.38411 1.05700 1.06540 1.22552 0.96232 0.95780 0.94911 1.22440 0.95654 0.96577 0.96763 1.22954 0.96241 0.99832 0.98790 1.22833 0.96453 0.98771 1.00201 1.22870 0.97266 0.96705 0.99457 0.93073 0.90649 0.92827 0.92030 0.93370 0.95245 0.91263 0.89859 0.92201 0.90376 0.92074 0.90790 0.90205 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 13.28 55.43 0.74 -25.48 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.49 -13.99 9.05 -34.44 -0.31 -14.30 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.17 4.50 2.76 -72.59 -0.20 4.30 16 10 H 0.04 1.06 7.90 -51.93 -0.41 0.65 16 11 C -0.13 -3.16 8.00 -26.20 -0.21 -3.37 16 12 C -0.01 -0.23 7.70 -7.53 -0.06 -0.29 16 13 N -0.47 -10.57 6.11 -237.87 -1.45 -12.02 16 14 C 0.03 0.67 4.62 -3.83 -0.02 0.65 16 15 C -0.10 -1.53 3.96 -89.71 -0.35 -1.88 16 16 C -0.14 -1.86 7.64 -25.92 -0.20 -2.06 16 17 C -0.15 -1.81 8.08 -25.92 -0.21 -2.02 16 18 C -0.13 -1.90 7.65 -25.82 -0.20 -2.10 16 19 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 20 H 0.07 1.81 8.11 -51.92 -0.42 1.38 16 21 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 22 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.05 0.92 7.44 -51.93 -0.39 0.53 16 24 H 0.03 0.56 7.35 -51.93 -0.38 0.17 16 25 H 0.07 1.42 7.82 -51.93 -0.41 1.02 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.27 7.90 -51.93 -0.41 0.86 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 262.91 15.07 3.96 3.96 Total: -1.00 -28.84 262.91 -8.97 -37.81 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.34 Total: -1.46 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.85 Total: -19.49 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.72 Total: -37.50 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.84 -8.97 -37.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.773 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds