Wall clock time and date at job start Mon Mar 30 2020 02:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00302 * 2 1 4 4 H 1.48492 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46886 * 300.00607 * 3 2 1 6 6 H 1.48506 * 109.46859 * 60.00089 * 3 2 1 7 7 C 1.37878 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00600 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99827 * 359.97438 * 7 2 1 10 10 H 1.09001 * 112.78495 * 310.81326 * 9 7 2 11 11 C 1.53508 * 113.47662 * 81.62113 * 9 7 2 12 12 C 1.53509 * 83.57637 * 140.78974 * 11 9 7 13 13 N 1.47476 * 113.47433 * 180.02562 * 9 7 2 14 14 C 1.46900 * 111.00060 * 106.52953 * 13 9 7 15 15 C 1.52994 * 109.47402 * 187.49214 * 14 13 9 16 16 C 1.53782 * 113.61734 * 184.99959 * 15 14 13 17 17 C 1.53781 * 87.08260 * 220.02231 * 16 15 14 18 18 C 1.53786 * 87.17350 * 25.39213 * 17 16 15 19 19 H 0.97000 * 120.00126 * 359.97438 * 1 2 3 20 20 H 1.09007 * 114.16918 * 27.14329 * 11 9 7 21 21 H 1.09001 * 114.34340 * 254.45057 * 11 9 7 22 22 H 1.08996 * 113.47349 * 219.20669 * 12 11 9 23 23 H 1.09004 * 113.52642 * 88.74816 * 12 11 9 24 24 H 1.09005 * 109.46682 * 67.49818 * 14 13 9 25 25 H 1.08998 * 109.47034 * 307.49864 * 14 13 9 26 26 H 1.09002 * 112.84929 * 316.20035 * 15 14 13 27 27 H 1.09001 * 113.61250 * 105.47049 * 16 15 14 28 28 H 1.08996 * 113.68722 * 334.58363 * 16 15 14 29 29 H 1.09002 * 113.61445 * 139.98212 * 17 16 15 30 30 H 1.09002 * 113.61408 * 270.79943 * 17 16 15 31 31 H 1.08993 * 113.61491 * 89.15923 * 18 17 16 32 32 H 1.09000 * 113.61138 * 220.06261 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.4714 -2.5365 0.7603 11 6 0.7670 -2.9259 -1.3934 12 6 1.1649 -4.3285 -0.9127 13 7 2.1288 -3.6843 -0.0005 14 6 2.1286 -4.3396 1.3142 15 6 3.1852 -5.4459 1.3329 16 6 3.1841 -6.2771 2.6267 17 6 4.7197 -6.2587 2.5468 18 6 4.5863 -4.9554 1.7414 19 1 -0.4850 0.8400 0.0004 20 1 1.3763 -2.5457 -2.2135 21 1 -0.3030 -2.7968 -1.5564 22 1 1.6368 -4.9347 -1.6858 23 1 0.3629 -4.8548 -0.3952 24 1 1.1463 -4.7722 1.5043 25 1 2.3578 -3.6051 2.0863 26 1 3.1815 -6.0501 0.4257 27 1 2.7525 -7.2708 2.5069 28 1 2.7853 -5.7437 3.4895 29 1 5.2057 -6.1267 3.5135 30 1 5.1371 -7.0860 1.9727 31 1 4.5715 -4.0588 2.3610 32 1 5.2850 -4.8837 0.9079 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260950030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:26 Heat of formation + Delta-G solvation = 26.713236 kcal Electronic energy + Delta-G solvation = -12429.930537 eV Core-core repulsion = 10391.050993 eV Total energy + Delta-G solvation = -2038.879544 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.81411 -39.11886 -34.60813 -31.59634 -28.69888 -26.82786 -26.32557 -24.64427 -22.91429 -20.47900 -20.16200 -18.60165 -17.02372 -16.64866 -16.07870 -15.63685 -15.60336 -14.73676 -13.94695 -13.76481 -13.27523 -13.17072 -12.97069 -12.79637 -12.38132 -12.26482 -12.10586 -11.98323 -11.67195 -11.37510 -11.02849 -10.98387 -10.69726 -10.45780 -9.47012 -8.16814 -6.25282 1.39376 1.40678 1.53839 2.41128 3.11599 3.38922 3.78492 3.88109 3.94095 4.05842 4.15559 4.29222 4.49274 4.62761 4.70348 4.80328 4.88855 4.92327 4.93388 5.00342 5.06468 5.14845 5.20425 5.26450 5.45331 5.47756 5.58776 5.70281 5.83460 6.33306 6.54435 6.86196 7.42512 8.93016 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.009544 C = 0.008364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.461705 B = 2933.032766 C = 3346.873536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.051 0.949 9 C 0.164 3.836 10 H 0.008 0.992 11 C -0.134 4.134 12 C 0.007 3.993 13 N -0.483 5.483 14 C 0.036 3.964 15 C -0.099 4.099 16 C -0.132 4.132 17 C -0.129 4.129 18 C -0.135 4.135 19 H 0.263 0.737 20 H 0.066 0.934 21 H 0.047 0.953 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.033 0.967 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -10.639 2.911 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.069 0.931 9 C 0.056 3.944 10 H 0.026 0.974 11 C -0.173 4.173 12 C -0.122 4.122 13 N -0.206 5.206 14 C -0.093 4.093 15 C -0.118 4.118 16 C -0.170 4.170 17 C -0.166 4.166 18 C -0.173 4.173 19 H 0.072 0.928 20 H 0.085 0.915 21 H 0.066 0.934 22 H 0.106 0.894 23 H 0.082 0.918 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.826 -10.485 2.773 12.311 hybrid contribution -0.834 1.106 0.310 1.419 sum 4.992 -9.379 3.084 11.063 Atomic orbital electron populations 1.70073 1.07300 1.27536 1.51604 1.25769 0.95710 1.02542 0.94705 0.85468 0.78919 0.79236 0.77800 1.19324 1.20231 1.20405 1.21244 0.92957 0.91019 1.49956 0.93068 1.20684 0.90418 0.90157 0.93138 0.97416 1.23024 0.98844 0.95971 0.99449 1.23762 0.94721 0.96163 0.97577 1.68906 1.38156 1.05019 1.08470 1.22573 0.97761 0.96150 0.92777 1.22473 0.94771 0.95951 0.98578 1.22922 0.97123 1.00093 0.96863 1.22777 0.95943 0.97300 1.00559 1.22897 0.96806 0.97811 0.99762 0.92808 0.91514 0.93448 0.89375 0.91846 0.94913 0.93463 0.89447 0.90296 0.90547 0.90664 0.89051 0.91774 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 13.28 21.45 0.28 -54.73 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.51 -29.71 9.05 25.60 0.23 -29.48 16 8 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 9 C 0.16 8.66 2.76 41.44 0.11 8.78 16 10 H 0.01 0.47 7.90 -2.39 -0.02 0.45 16 11 C -0.13 -6.33 8.00 30.94 0.25 -6.08 16 12 C 0.01 0.26 7.70 83.56 0.64 0.90 16 13 N -0.48 -21.52 6.11 -906.49 -5.54 -27.05 16 14 C 0.04 1.40 4.62 86.30 0.40 1.80 16 15 C -0.10 -3.00 3.96 -10.21 -0.04 -3.05 16 16 C -0.13 -3.16 7.64 31.12 0.24 -2.92 16 17 C -0.13 -2.82 8.08 31.12 0.25 -2.57 16 18 C -0.14 -3.94 7.65 31.18 0.24 -3.70 16 19 H 0.26 14.72 8.31 -92.71 -0.77 13.94 16 20 H 0.07 3.22 8.11 -2.38 -0.02 3.20 16 21 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 23 H 0.06 2.30 7.44 -2.38 -0.02 2.28 16 24 H 0.03 1.22 7.35 -2.38 -0.02 1.20 16 25 H 0.05 2.00 7.82 -2.39 -0.02 1.98 16 26 H 0.09 2.60 8.14 -2.39 -0.02 2.59 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 1.86 8.10 -2.39 -0.02 1.84 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 2.04 7.90 -2.39 -0.02 2.03 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -61.85 262.91 0.62 -61.23 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.06 Total: 8.84 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 2.78 Total: -35.19 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -5.25 Total: -81.78 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -61.85 0.62 -61.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.940 kcal (2) G-P(sol) polarization free energy of solvation -61.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds