Wall clock time and date at job start Mon Mar 30 2020 02:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00241 * 2 1 4 4 H 1.48500 * 109.47397 * 270.27950 * 3 2 1 5 5 H 1.48505 * 109.46725 * 30.27562 * 3 2 1 6 6 H 1.48499 * 109.47350 * 150.27498 * 3 2 1 7 7 C 1.37885 * 120.00376 * 180.27910 * 2 1 3 8 8 H 1.08002 * 119.99188 * 359.72136 * 7 2 1 9 9 C 1.50695 * 120.00396 * 179.72353 * 7 2 1 10 10 H 1.09003 * 110.26971 * 59.29603 * 9 7 2 11 11 C 1.54595 * 110.30891 * 297.20901 * 9 7 2 12 12 C 1.55103 * 102.84262 * 219.18283 * 11 9 7 13 13 N 1.48527 * 103.28424 * 37.30952 * 12 11 9 14 14 C 1.46901 * 110.99739 * 200.33252 * 13 12 11 15 15 C 1.53781 * 113.61451 * 283.38088 * 14 13 12 16 16 C 1.53952 * 87.02081 * 220.05256 * 15 14 13 17 17 C 1.53781 * 87.11307 * 25.36103 * 16 15 14 18 18 C 1.47900 * 105.81845 * 320.84196 * 13 12 11 19 19 H 0.96994 * 119.99847 * 359.72213 * 1 2 3 20 20 H 1.08999 * 110.72144 * 337.48695 * 11 9 7 21 21 H 1.09004 * 110.72587 * 100.76954 * 11 9 7 22 22 H 1.08998 * 110.59562 * 278.87080 * 12 11 9 23 23 H 1.09004 * 110.82146 * 155.85005 * 12 11 9 24 24 H 1.08998 * 112.85539 * 54.58039 * 14 13 12 25 25 H 1.09003 * 113.61290 * 334.56866 * 15 14 13 26 26 H 1.08993 * 113.61779 * 105.47017 * 15 14 13 27 27 H 1.09000 * 113.53255 * 270.80802 * 16 15 14 28 28 H 1.09001 * 113.74457 * 139.94583 * 16 15 14 29 29 H 1.08996 * 113.61117 * 220.09169 * 17 16 15 30 30 H 1.08996 * 113.68738 * 89.20168 * 17 16 15 31 31 H 1.09007 * 109.92042 * 265.98029 * 18 13 12 32 32 H 1.09002 * 110.08373 * 144.77800 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4908 2.0499 -1.4000 5 1 1.4495 2.6510 0.7059 6 1 3.5496 1.4385 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4646 -2.1293 -0.0058 9 6 3.5116 -1.1940 -0.0121 10 1 3.8929 -0.6741 0.8668 11 6 4.0427 -0.5279 -1.3021 12 6 5.2602 -1.4149 -1.6720 13 7 4.8075 -2.7830 -1.3123 14 6 5.9521 -3.6864 -1.1341 15 6 6.5815 -4.1518 -2.4578 16 6 6.7278 -5.5395 -1.8074 17 6 5.5495 -5.1518 -0.8985 18 6 4.0459 -2.6377 -0.0528 19 1 -0.4850 0.8400 0.0041 20 1 3.2901 -0.5583 -2.0899 21 1 4.3561 0.4975 -1.1059 22 1 6.1335 -1.1317 -1.0844 23 1 5.4776 -1.3494 -2.7381 24 1 6.6787 -3.3120 -0.4131 25 1 5.8896 -4.1350 -3.2999 26 1 7.5337 -3.6708 -2.6815 27 1 7.6676 -5.6720 -1.2714 28 1 6.5053 -6.3661 -2.4822 29 1 5.6698 -5.4769 0.1348 30 1 4.5743 -5.4086 -1.3123 31 1 4.7012 -2.8153 0.8000 32 1 3.2143 -3.3421 -0.0349 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260957928.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:52 Heat of formation + Delta-G solvation = 21.759028 kcal Electronic energy + Delta-G solvation = -12616.074013 eV Core-core repulsion = 10576.979638 eV Total energy + Delta-G solvation = -2039.094375 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.19977 -36.67639 -32.63889 -30.18642 -28.42055 -25.48851 -24.79003 -23.18893 -20.62832 -19.41836 -18.99592 -16.83048 -16.05584 -15.27312 -14.55449 -13.91744 -13.47217 -12.94309 -12.73361 -12.31373 -12.12191 -11.84869 -11.58335 -11.13360 -10.93751 -10.70440 -10.50019 -10.10808 -10.00416 -9.88187 -9.82124 -9.39325 -8.97133 -8.52305 -7.80292 -6.02860 -4.00563 3.31134 3.39290 3.40463 4.45232 4.55068 4.76690 4.89591 5.02956 5.14356 5.28751 5.56167 5.74023 5.78038 5.86011 5.95450 6.00844 6.03110 6.11858 6.13393 6.26649 6.43641 6.58138 6.64548 6.75489 6.91130 7.17062 7.21296 7.70959 7.76746 7.82850 8.57711 9.01461 9.59679 11.10517 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.068979 B = 0.009492 C = 0.008786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.823305 B = 2949.237469 C = 3186.298612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.004 3.996 10 H 0.029 0.971 11 C -0.130 4.130 12 C 0.039 3.961 13 N -0.504 5.504 14 C 0.044 3.956 15 C -0.127 4.127 16 C -0.143 4.143 17 C -0.127 4.127 18 C 0.057 3.943 19 H 0.263 0.737 20 H 0.077 0.923 21 H 0.047 0.953 22 H 0.030 0.970 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.022 0.978 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.863 -5.876 -2.848 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.541 4.541 8 H 0.093 0.907 9 C -0.016 4.016 10 H 0.047 0.953 11 C -0.169 4.169 12 C -0.089 4.089 13 N -0.228 5.228 14 C -0.065 4.065 15 C -0.164 4.164 16 C -0.181 4.181 17 C -0.165 4.165 18 C -0.070 4.070 19 H 0.072 0.928 20 H 0.096 0.904 21 H 0.065 0.935 22 H 0.048 0.952 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.040 0.960 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.375 -5.995 -3.252 14.130 hybrid contribution 0.938 1.359 0.674 1.784 sum 13.313 -4.636 -2.578 14.331 Atomic orbital electron populations 1.69902 1.06234 1.26797 1.51210 1.24994 0.94649 0.98930 0.94621 0.86914 0.79968 0.83857 0.78418 1.20274 1.22073 1.19232 1.21061 0.88298 0.94458 1.50243 0.90679 1.20003 0.97404 0.91141 0.93014 0.95292 1.22997 0.96202 0.96528 1.01134 1.23163 0.96811 0.89334 0.99595 1.64960 1.18670 1.08140 1.31050 1.23276 0.92828 0.93451 0.96949 1.22952 1.00083 0.95790 0.97613 1.22761 0.98597 0.97385 0.99322 1.22921 0.99071 0.95130 0.99384 1.22829 0.96262 0.99751 0.88155 0.92757 0.90416 0.93468 0.95182 0.91371 0.92588 0.89298 0.92290 0.90751 0.91453 0.92083 0.89144 0.96008 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.88 21.99 24.78 -169.99 -4.21 17.77 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.27 -6.41 6.38 56.52 0.36 -6.05 16 7 C -0.50 -14.31 8.97 -34.44 -0.31 -14.62 16 8 H 0.08 2.31 7.59 -52.49 -0.40 1.92 16 9 C 0.00 0.09 2.43 -90.42 -0.22 -0.13 16 10 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 11 C -0.13 -2.86 4.85 -24.78 -0.12 -2.98 16 12 C 0.04 0.72 6.40 -1.81 -0.01 0.70 16 13 N -0.50 -9.50 5.21 -221.42 -1.15 -10.65 16 14 C 0.04 0.68 2.81 -66.90 -0.19 0.49 16 15 C -0.13 -1.64 7.71 -25.83 -0.20 -1.84 16 16 C -0.14 -1.62 8.09 -25.83 -0.21 -1.83 16 17 C -0.13 -1.74 7.46 -25.92 -0.19 -1.93 16 18 C 0.06 1.20 5.98 -2.76 -0.02 1.18 16 19 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 20 H 0.08 1.83 7.86 -51.93 -0.41 1.43 16 21 H 0.05 1.01 6.05 -51.93 -0.31 0.69 16 22 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 23 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 25 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.02 0.42 7.78 -51.93 -0.40 0.02 16 32 H 0.08 1.72 7.39 -51.93 -0.38 1.34 16 LS Contribution 249.95 15.07 3.77 3.77 Total: -1.00 -29.77 249.95 -7.64 -37.42 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -5.25 Total: -2.11 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -1.56 Total: -19.04 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.38 Total: -37.81 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.21 Total: 17.77 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.77 -7.64 -37.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957928.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.175 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds