Wall clock time and date at job start Mon Mar 30 2020 02:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00241 * 2 1 4 4 H 1.48500 * 109.47397 * 270.27950 * 3 2 1 5 5 H 1.48505 * 109.46725 * 30.27562 * 3 2 1 6 6 H 1.48499 * 109.47350 * 150.27498 * 3 2 1 7 7 C 1.37885 * 120.00376 * 180.27910 * 2 1 3 8 8 H 1.08002 * 119.99188 * 359.72136 * 7 2 1 9 9 C 1.50695 * 120.00396 * 179.72353 * 7 2 1 10 10 H 1.09003 * 110.26971 * 59.29603 * 9 7 2 11 11 C 1.54595 * 110.30891 * 297.20901 * 9 7 2 12 12 C 1.55103 * 102.84262 * 219.18283 * 11 9 7 13 13 N 1.48527 * 103.28424 * 37.30952 * 12 11 9 14 14 C 1.46901 * 110.99739 * 200.33252 * 13 12 11 15 15 C 1.53781 * 113.61451 * 283.38088 * 14 13 12 16 16 C 1.53952 * 87.02081 * 220.05256 * 15 14 13 17 17 C 1.53781 * 87.11307 * 25.36103 * 16 15 14 18 18 C 1.47900 * 105.81845 * 320.84196 * 13 12 11 19 19 H 0.96994 * 119.99847 * 359.72213 * 1 2 3 20 20 H 1.08999 * 110.72144 * 337.48695 * 11 9 7 21 21 H 1.09004 * 110.72587 * 100.76954 * 11 9 7 22 22 H 1.08998 * 110.59562 * 278.87080 * 12 11 9 23 23 H 1.09004 * 110.82146 * 155.85005 * 12 11 9 24 24 H 1.08998 * 112.85539 * 54.58039 * 14 13 12 25 25 H 1.09003 * 113.61290 * 334.56866 * 15 14 13 26 26 H 1.08993 * 113.61779 * 105.47017 * 15 14 13 27 27 H 1.09000 * 113.53255 * 270.80802 * 16 15 14 28 28 H 1.09001 * 113.74457 * 139.94583 * 16 15 14 29 29 H 1.08996 * 113.61117 * 220.09169 * 17 16 15 30 30 H 1.08996 * 113.68738 * 89.20168 * 17 16 15 31 31 H 1.09007 * 109.92042 * 265.98029 * 18 13 12 32 32 H 1.09002 * 110.08373 * 144.77800 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4908 2.0499 -1.4000 5 1 1.4495 2.6510 0.7059 6 1 3.5496 1.4385 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4646 -2.1293 -0.0058 9 6 3.5116 -1.1940 -0.0121 10 1 3.8929 -0.6741 0.8668 11 6 4.0427 -0.5279 -1.3021 12 6 5.2602 -1.4149 -1.6720 13 7 4.8075 -2.7830 -1.3123 14 6 5.9521 -3.6864 -1.1341 15 6 6.5815 -4.1518 -2.4578 16 6 6.7278 -5.5395 -1.8074 17 6 5.5495 -5.1518 -0.8985 18 6 4.0459 -2.6377 -0.0528 19 1 -0.4850 0.8400 0.0041 20 1 3.2901 -0.5583 -2.0899 21 1 4.3561 0.4975 -1.1059 22 1 6.1335 -1.1317 -1.0844 23 1 5.4776 -1.3494 -2.7381 24 1 6.6787 -3.3120 -0.4131 25 1 5.8896 -4.1350 -3.2999 26 1 7.5337 -3.6708 -2.6815 27 1 7.6676 -5.6720 -1.2714 28 1 6.5053 -6.3661 -2.4822 29 1 5.6698 -5.4769 0.1348 30 1 4.5743 -5.4086 -1.3123 31 1 4.7012 -2.8153 0.8000 32 1 3.2143 -3.3421 -0.0349 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260957928.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:51 Heat of formation + Delta-G solvation = 1.617844 kcal Electronic energy + Delta-G solvation = -12616.947400 eV Core-core repulsion = 10576.979638 eV Total energy + Delta-G solvation = -2039.967762 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.51234 -38.10804 -34.73244 -31.96683 -30.06871 -26.91042 -26.18636 -24.68607 -22.12641 -21.16377 -20.22576 -18.94895 -17.43610 -16.47540 -16.43713 -15.53664 -14.88012 -14.80341 -14.44404 -13.75437 -13.34070 -13.26718 -13.17900 -12.75472 -12.59786 -12.37765 -11.93629 -11.67371 -11.53440 -11.43390 -11.14170 -11.06409 -10.99180 -10.73695 -9.25017 -8.28662 -6.31786 1.32885 1.35346 1.45569 2.34389 3.04556 3.19140 3.65341 3.86014 3.95999 3.99696 4.12210 4.29334 4.35916 4.45007 4.64833 4.74351 4.86141 4.88831 4.97126 5.00376 5.07700 5.11240 5.17583 5.33456 5.38288 5.46333 5.57011 5.70379 6.09317 6.28737 6.41632 6.73376 7.32250 8.88471 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.068979 B = 0.009492 C = 0.008786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.823305 B = 2949.237469 C = 3186.298612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.010 3.990 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.246 1.246 7 C -0.510 4.510 8 H 0.030 0.970 9 C -0.002 4.002 10 H 0.030 0.970 11 C -0.130 4.130 12 C 0.048 3.952 13 N -0.518 5.518 14 C 0.032 3.968 15 C -0.121 4.121 16 C -0.126 4.126 17 C -0.134 4.134 18 C 0.067 3.933 19 H 0.265 0.735 20 H 0.053 0.947 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.021 -5.484 -3.322 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.170 1.170 7 C -0.548 4.548 8 H 0.048 0.952 9 C -0.021 4.021 10 H 0.048 0.952 11 C -0.168 4.168 12 C -0.080 4.080 13 N -0.243 5.243 14 C -0.076 4.076 15 C -0.159 4.159 16 C -0.164 4.164 17 C -0.172 4.172 18 C -0.061 4.061 19 H 0.074 0.926 20 H 0.072 0.928 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.559 -5.625 -3.731 16.960 hybrid contribution -0.110 1.128 0.836 1.409 sum 15.448 -4.497 -2.895 16.348 Atomic orbital electron populations 1.70060 1.08278 1.27986 1.53007 1.25906 0.95442 1.03121 0.94213 0.85844 0.79268 0.78529 0.79289 1.18816 1.21999 1.16954 1.21331 0.91004 0.92843 1.49665 0.95198 1.19984 0.94282 0.93624 0.94247 0.95208 1.22857 0.97220 0.97783 0.98957 1.23131 0.95582 0.88059 1.01187 1.64928 1.20624 1.09074 1.29657 1.23521 0.91963 0.93156 0.98978 1.22920 1.00331 0.96665 0.95963 1.22723 0.98181 0.96907 0.98551 1.22942 0.99372 0.94514 1.00339 1.22560 0.96210 0.97150 0.90195 0.92598 0.92821 0.92342 0.93138 0.89347 0.91713 0.90350 0.90464 0.88754 0.90272 0.91521 0.90994 0.94374 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 2 C 0.01 0.57 5.46 84.66 0.46 1.04 16 3 Si 0.95 45.06 24.78 68.60 1.70 46.76 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.25 -10.77 6.38 99.48 0.63 -10.14 16 7 C -0.51 -30.05 8.97 25.60 0.23 -29.82 16 8 H 0.03 1.96 7.59 -2.91 -0.02 1.94 16 9 C 0.00 -0.10 2.43 -10.66 -0.03 -0.12 16 10 H 0.03 1.42 7.18 -2.39 -0.02 1.40 16 11 C -0.13 -5.48 4.85 31.86 0.15 -5.33 16 12 C 0.05 1.63 6.40 86.71 0.56 2.18 16 13 N -0.52 -18.69 5.21 -854.46 -4.45 -23.14 16 14 C 0.03 0.91 2.81 45.44 0.13 1.03 16 15 C -0.12 -2.73 7.71 31.18 0.24 -2.49 16 16 C -0.13 -2.43 8.09 31.18 0.25 -2.18 16 17 C -0.13 -3.41 7.46 31.12 0.23 -3.18 16 18 C 0.07 2.78 5.98 86.44 0.52 3.29 16 19 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 20 H 0.05 2.50 7.86 -2.39 -0.02 2.48 16 21 H 0.06 2.31 6.05 -2.38 -0.01 2.30 16 22 H 0.05 1.53 8.00 -2.39 -0.02 1.51 16 23 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 24 H 0.07 1.73 8.11 -2.39 -0.02 1.71 16 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 1.44 7.78 -2.38 -0.02 1.42 16 32 H 0.05 2.39 7.39 -2.39 -0.02 2.37 16 Total: -1.00 -65.65 249.95 1.29 -64.37 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.00 Total: 8.21 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 2.74 Total: -35.56 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -4.15 Total: -83.78 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.70 Total: 46.76 kcal Total: -65.65 1.29 -64.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957928.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.984 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds