Wall clock time and date at job start Mon Mar 30 2020 02:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00218 * 2 1 4 4 H 1.48498 * 109.47268 * 240.00651 * 3 2 1 5 5 H 1.48498 * 109.46888 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47105 * 120.00321 * 3 2 1 7 7 C 1.37879 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99776 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.27725 * 302.08668 * 9 7 2 11 11 C 1.54590 * 110.39645 * 64.23296 * 9 7 2 12 12 C 1.54933 * 102.92413 * 140.91378 * 11 9 7 13 13 N 1.48532 * 103.22756 * 322.58935 * 12 11 9 14 14 C 1.46899 * 111.00025 * 159.72111 * 13 12 11 15 15 C 1.53785 * 113.61372 * 175.00119 * 14 13 12 16 16 C 1.53787 * 87.17268 * 219.97250 * 15 14 13 17 17 C 1.53779 * 113.61841 * 77.50334 * 14 13 12 18 18 C 1.47897 * 105.82278 * 39.20462 * 13 12 11 19 19 H 0.97003 * 119.99784 * 359.97438 * 1 2 3 20 20 H 1.09000 * 110.72924 * 259.27651 * 11 9 7 21 21 H 1.09001 * 110.72582 * 22.55829 * 11 9 7 22 22 H 1.09007 * 110.67037 * 204.15100 * 12 11 9 23 23 H 1.08997 * 110.66832 * 81.02251 * 12 11 9 24 24 H 1.09003 * 112.85163 * 306.19653 * 14 13 12 25 25 H 1.08992 * 113.61686 * 334.56440 * 15 14 13 26 26 H 1.09000 * 113.60980 * 105.38658 * 15 14 13 27 27 H 1.08995 * 113.61206 * 140.02377 * 16 15 14 28 28 H 1.08992 * 113.61475 * 270.92616 * 16 15 14 29 29 H 1.09000 * 113.61757 * 254.52884 * 17 14 13 30 30 H 1.09006 * 113.61433 * 25.34730 * 17 14 13 31 31 H 1.08998 * 109.91573 * 94.02214 * 18 13 12 32 32 H 1.08997 * 109.91889 * 215.12273 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.5921 -2.5549 0.8659 11 6 0.4355 -2.6505 -1.3052 12 6 0.5997 -4.1533 -1.6441 13 7 2.0036 -4.4388 -1.2521 14 6 2.2099 -5.8783 -1.0443 15 6 3.6724 -6.2556 -0.7548 16 6 3.4525 -7.4860 -1.6507 17 6 2.3452 -6.6764 -2.3518 18 6 2.2344 -3.6842 -0.0012 19 1 -0.4850 0.8401 0.0004 20 1 -0.6129 -2.4056 -1.1354 21 1 0.8547 -2.0287 -2.0963 22 1 0.4555 -4.3252 -2.7108 23 1 -0.0935 -4.7576 -1.0589 24 1 1.4998 -6.3102 -0.3391 25 1 4.3945 -5.5455 -1.1578 26 1 3.8606 -6.5040 0.2896 27 1 4.3019 -7.7149 -2.2942 28 1 3.0814 -8.3577 -1.1119 29 1 1.4618 -7.2660 -2.5969 30 1 2.7030 -6.0809 -3.1918 31 1 2.0441 -4.3252 0.8596 32 1 3.2609 -3.3187 0.0280 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260957929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:55 Heat of formation + Delta-G solvation = 15.073739 kcal Electronic energy + Delta-G solvation = -12553.112352 eV Core-core repulsion = 10513.728081 eV Total energy + Delta-G solvation = -2039.384271 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.05131 -36.44288 -32.66831 -29.53564 -28.18816 -25.39742 -24.60656 -23.31447 -20.28490 -19.36764 -18.91622 -16.43960 -15.83113 -15.19402 -14.44205 -13.99019 -13.32570 -12.82213 -12.24591 -12.20909 -12.02171 -11.48665 -11.17077 -11.08282 -10.84424 -10.62754 -10.47443 -10.33431 -9.90151 -9.81582 -9.61687 -9.19069 -8.74569 -8.35622 -7.65051 -5.96745 -3.98359 3.35996 3.40058 3.43245 4.48354 4.70085 4.84599 4.97651 5.11232 5.24464 5.37041 5.73415 5.83896 5.95604 6.03638 6.05863 6.11754 6.18568 6.28842 6.34077 6.49009 6.65360 6.67439 6.94053 7.19642 7.27457 7.52952 7.70375 7.92473 7.96329 8.08923 8.49825 9.02988 9.64672 11.13475 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.067101 B = 0.008691 C = 0.008122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.180247 B = 3220.928671 C = 3446.558147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.092 4.092 12 C 0.030 3.970 13 N -0.506 5.506 14 C 0.045 3.955 15 C -0.128 4.128 16 C -0.143 4.143 17 C -0.126 4.126 18 C 0.048 3.952 19 H 0.260 0.740 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.027 0.973 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.017 0.983 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 -10.766 -2.582 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.130 4.130 12 C -0.097 4.097 13 N -0.230 5.230 14 C -0.065 4.065 15 C -0.165 4.165 16 C -0.181 4.181 17 C -0.164 4.164 18 C -0.080 4.080 19 H 0.069 0.931 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.035 0.965 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.543 -10.483 -2.978 11.459 hybrid contribution -0.200 0.640 0.690 0.963 sum 3.342 -9.843 -2.288 10.644 Atomic orbital electron populations 1.69963 1.05897 1.26516 1.50746 1.24985 0.94850 0.99033 0.95236 0.86677 0.79593 0.83239 0.78596 1.20259 1.21401 1.20356 1.21154 0.92696 0.90228 1.50434 0.92552 1.19491 0.92526 0.91985 0.93952 0.95357 1.22404 1.00157 0.90650 0.99832 1.23301 0.88346 0.99136 0.98957 1.64953 1.22970 1.04565 1.30515 1.23254 0.96484 0.89974 0.96771 1.22918 0.97133 0.97262 0.99217 1.22780 0.99193 0.96886 0.99242 1.22959 0.98174 0.97618 0.97619 1.23004 1.01612 0.95208 0.88146 0.93081 0.92399 0.92053 0.91960 0.95500 0.92685 0.89334 0.92214 0.91555 0.90758 0.92349 0.89397 0.96460 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 12.63 55.43 0.70 -25.34 16 2 C 0.06 1.70 5.34 -17.82 -0.10 1.60 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.21 8.38 -34.44 -0.29 -14.50 16 8 H 0.06 1.56 7.35 -52.49 -0.39 1.18 16 9 C 0.04 1.01 2.87 -90.41 -0.26 0.75 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.09 -2.21 5.75 -24.88 -0.14 -2.35 16 12 C 0.03 0.61 6.42 -1.90 -0.01 0.60 16 13 N -0.51 -10.07 5.21 -221.53 -1.15 -11.23 16 14 C 0.04 0.73 2.82 -66.90 -0.19 0.54 16 15 C -0.13 -1.82 7.42 -25.91 -0.19 -2.02 16 16 C -0.14 -1.71 8.10 -25.77 -0.21 -1.92 16 17 C -0.13 -1.73 7.73 -25.78 -0.20 -1.93 16 18 C 0.05 1.05 5.95 -2.75 -0.02 1.03 16 19 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 20 H 0.06 1.44 8.12 -51.93 -0.42 1.02 16 21 H 0.06 1.58 7.86 -51.93 -0.41 1.18 16 22 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 23 H 0.03 0.52 7.99 -51.93 -0.41 0.10 16 24 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 25 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.02 0.36 7.77 -51.93 -0.40 -0.05 16 32 H 0.07 1.56 7.40 -51.93 -0.38 1.17 16 LS Contribution 257.51 15.07 3.88 3.88 Total: -1.00 -28.56 257.51 -8.55 -37.11 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -5.36 Total: -2.86 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.60 Total: -18.20 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.45 Total: -36.57 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.56 -8.55 -37.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.184 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds