Wall clock time and date at job start Mon Mar 30 2020 02:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00218 * 2 1 4 4 H 1.48498 * 109.47268 * 240.00651 * 3 2 1 5 5 H 1.48498 * 109.46888 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47105 * 120.00321 * 3 2 1 7 7 C 1.37879 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99776 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.27725 * 302.08668 * 9 7 2 11 11 C 1.54590 * 110.39645 * 64.23296 * 9 7 2 12 12 C 1.54933 * 102.92413 * 140.91378 * 11 9 7 13 13 N 1.48532 * 103.22756 * 322.58935 * 12 11 9 14 14 C 1.46899 * 111.00025 * 159.72111 * 13 12 11 15 15 C 1.53785 * 113.61372 * 175.00119 * 14 13 12 16 16 C 1.53787 * 87.17268 * 219.97250 * 15 14 13 17 17 C 1.53779 * 113.61841 * 77.50334 * 14 13 12 18 18 C 1.47897 * 105.82278 * 39.20462 * 13 12 11 19 19 H 0.97003 * 119.99784 * 359.97438 * 1 2 3 20 20 H 1.09000 * 110.72924 * 259.27651 * 11 9 7 21 21 H 1.09001 * 110.72582 * 22.55829 * 11 9 7 22 22 H 1.09007 * 110.67037 * 204.15100 * 12 11 9 23 23 H 1.08997 * 110.66832 * 81.02251 * 12 11 9 24 24 H 1.09003 * 112.85163 * 306.19653 * 14 13 12 25 25 H 1.08992 * 113.61686 * 334.56440 * 15 14 13 26 26 H 1.09000 * 113.60980 * 105.38658 * 15 14 13 27 27 H 1.08995 * 113.61206 * 140.02377 * 16 15 14 28 28 H 1.08992 * 113.61475 * 270.92616 * 16 15 14 29 29 H 1.09000 * 113.61757 * 254.52884 * 17 14 13 30 30 H 1.09006 * 113.61433 * 25.34730 * 17 14 13 31 31 H 1.08998 * 109.91573 * 94.02214 * 18 13 12 32 32 H 1.08997 * 109.91889 * 215.12273 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.5921 -2.5549 0.8659 11 6 0.4355 -2.6505 -1.3052 12 6 0.5997 -4.1533 -1.6441 13 7 2.0036 -4.4388 -1.2521 14 6 2.2099 -5.8783 -1.0443 15 6 3.6724 -6.2556 -0.7548 16 6 3.4525 -7.4860 -1.6507 17 6 2.3452 -6.6764 -2.3518 18 6 2.2344 -3.6842 -0.0012 19 1 -0.4850 0.8401 0.0004 20 1 -0.6129 -2.4056 -1.1354 21 1 0.8547 -2.0287 -2.0963 22 1 0.4555 -4.3252 -2.7108 23 1 -0.0935 -4.7576 -1.0589 24 1 1.4998 -6.3102 -0.3391 25 1 4.3945 -5.5455 -1.1578 26 1 3.8606 -6.5040 0.2896 27 1 4.3019 -7.7149 -2.2942 28 1 3.0814 -8.3577 -1.1119 29 1 1.4618 -7.2660 -2.5969 30 1 2.7030 -6.0809 -3.1918 31 1 2.0441 -4.3252 0.8596 32 1 3.2609 -3.3187 0.0280 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260957929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:54 Heat of formation + Delta-G solvation = -2.336241 kcal Electronic energy + Delta-G solvation = -12553.867305 eV Core-core repulsion = 10513.728081 eV Total energy + Delta-G solvation = -2040.139224 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44246 -37.99113 -34.71349 -31.36423 -29.98237 -26.87674 -26.13829 -24.79518 -21.91704 -21.21892 -20.20546 -18.54925 -17.28643 -16.53117 -16.38598 -15.64680 -14.76413 -14.54157 -14.01563 -13.70744 -13.24281 -13.14382 -12.92982 -12.81342 -12.64436 -12.30813 -12.27041 -11.59961 -11.57910 -11.31799 -11.08243 -10.97842 -10.84212 -10.50533 -9.23978 -8.13478 -6.22477 1.41283 1.43285 1.50815 2.43501 3.16493 3.24518 3.68994 3.87013 4.00698 4.05861 4.18487 4.43942 4.50712 4.55479 4.67897 4.85135 4.89956 4.98134 5.00870 5.09250 5.11704 5.22070 5.34684 5.40847 5.54201 5.57555 5.71640 5.84038 6.17188 6.34822 6.44380 6.85729 7.44200 8.96218 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.067101 B = 0.008691 C = 0.008122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.180247 B = 3220.928671 C = 3446.558147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.030 3.970 10 H -0.002 1.002 11 C -0.085 4.085 12 C 0.043 3.957 13 N -0.513 5.513 14 C 0.028 3.972 15 C -0.130 4.130 16 C -0.125 4.125 17 C -0.121 4.121 18 C 0.061 3.939 19 H 0.261 0.739 20 H 0.039 0.961 21 H 0.037 0.963 22 H 0.083 0.917 23 H 0.037 0.963 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.026 0.974 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 -12.019 -3.122 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.011 3.989 10 H 0.016 0.984 11 C -0.123 4.123 12 C -0.085 4.085 13 N -0.237 5.237 14 C -0.080 4.080 15 C -0.168 4.168 16 C -0.162 4.162 17 C -0.159 4.159 18 C -0.067 4.067 19 H 0.070 0.930 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.490 -11.754 -3.519 13.066 hybrid contribution -0.512 1.010 0.879 1.433 sum 3.978 -10.745 -2.640 11.758 Atomic orbital electron populations 1.70086 1.07278 1.27354 1.51380 1.25782 0.95712 1.02515 0.94798 0.85640 0.78396 0.78932 0.78878 1.19693 1.20870 1.19509 1.21495 0.92820 0.91675 1.50585 0.92842 1.19487 0.93035 0.92986 0.93411 0.98422 1.22172 0.98413 0.93466 0.98289 1.23170 0.88958 0.95962 1.00361 1.64948 1.22540 1.07042 1.29191 1.23533 0.97937 0.87631 0.98936 1.22932 0.95299 0.98303 1.00251 1.22735 0.98941 0.96194 0.98371 1.22938 0.99551 0.97364 0.96035 1.22716 0.99885 0.94303 0.89782 0.93035 0.94249 0.94435 0.89913 0.94435 0.92471 0.90538 0.91566 0.89948 0.88908 0.90879 0.90172 0.95569 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.90 12.63 21.45 0.27 -54.63 16 2 C 0.01 0.60 5.34 84.65 0.45 1.05 16 3 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.53 -30.18 8.38 25.60 0.21 -29.96 16 8 H 0.05 3.01 7.35 -2.91 -0.02 2.99 16 9 C 0.03 1.57 2.87 -10.66 -0.03 1.54 16 10 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 11 C -0.08 -4.17 5.75 31.80 0.18 -3.98 16 12 C 0.04 1.69 6.42 86.65 0.56 2.25 16 13 N -0.51 -19.88 5.21 -854.79 -4.45 -24.34 16 14 C 0.03 0.86 2.82 45.44 0.13 0.99 16 15 C -0.13 -3.41 7.42 31.12 0.23 -3.18 16 16 C -0.12 -2.52 8.10 31.22 0.25 -2.27 16 17 C -0.12 -2.96 7.73 31.21 0.24 -2.72 16 18 C 0.06 2.68 5.95 86.45 0.51 3.20 16 19 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 20 H 0.04 2.03 8.12 -2.39 -0.02 2.01 16 21 H 0.04 1.98 7.86 -2.39 -0.02 1.96 16 22 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 23 H 0.04 1.39 7.99 -2.39 -0.02 1.38 16 24 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16 25 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 31 H 0.03 1.08 7.77 -2.39 -0.02 1.06 16 32 H 0.06 2.74 7.40 -2.39 -0.02 2.72 16 Total: -1.00 -61.38 257.51 1.65 -59.73 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.06 Total: 5.60 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 2.74 Total: -33.10 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -4.18 Total: -78.96 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.38 1.65 -59.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.395 kcal (2) G-P(sol) polarization free energy of solvation -61.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds