Wall clock time and date at job start Mon Mar 30 2020 02:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48498 * 109.47433 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47040 * 300.00032 * 3 2 1 6 6 H 1.48502 * 109.47195 * 59.99815 * 3 2 1 7 7 C 1.37874 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00281 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99820 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46865 * 180.02562 * 9 7 2 11 11 C 1.53940 * 113.73150 * 185.00012 * 10 9 7 12 12 N 1.47965 * 86.30091 * 221.86181 * 11 10 9 13 13 C 1.46903 * 110.99929 * 137.63426 * 12 11 10 14 14 C 1.53775 * 113.61319 * 166.93319 * 13 12 11 15 15 C 1.53962 * 87.02167 * 220.05118 * 14 13 12 16 16 C 1.53785 * 113.60863 * 69.32802 * 13 12 11 17 17 C 1.48307 * 90.62901 * 24.68553 * 12 11 10 18 18 H 0.97005 * 120.00030 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.47448 * 60.00194 * 9 7 2 20 20 H 1.09000 * 109.46872 * 299.99789 * 9 7 2 21 21 H 1.09002 * 113.01275 * 316.63255 * 10 9 7 22 22 H 1.08996 * 113.75861 * 336.23616 * 11 10 9 23 23 H 1.09001 * 113.76042 * 107.49204 * 11 10 9 24 24 H 1.08997 * 112.85222 * 298.13184 * 13 12 11 25 25 H 1.09005 * 113.61868 * 334.56811 * 14 13 12 26 26 H 1.08999 * 113.61580 * 105.47384 * 14 13 12 27 27 H 1.08998 * 113.53331 * 270.81602 * 15 14 13 28 28 H 1.08995 * 113.74263 * 139.94208 * 15 14 13 29 29 H 1.09005 * 113.61192 * 254.52719 * 16 13 12 30 30 H 1.08996 * 113.61553 * 25.34671 * 16 13 12 31 31 H 1.08994 * 113.75777 * 220.99579 * 17 12 11 32 32 H 1.09000 * 113.86222 * 89.63881 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.5811 -5.0452 -0.1209 12 7 2.5455 -5.4934 0.9079 13 6 1.8922 -6.3554 1.9019 14 6 2.8801 -7.1091 2.8079 15 6 1.9422 -8.3237 2.6845 16 6 1.4728 -7.7270 1.3471 17 6 2.6793 -4.1047 1.4109 18 1 -0.4850 0.8401 -0.0004 19 1 0.6248 -2.5571 -0.8896 20 1 0.6241 -2.5566 0.8903 21 1 3.0772 -3.5122 -0.6865 22 1 0.5433 -5.0651 0.2117 23 1 1.7251 -5.5169 -1.0930 24 1 1.0999 -5.8450 2.4494 25 1 3.8583 -7.2648 2.3529 26 1 2.9417 -6.7047 3.8183 27 1 1.1639 -8.3519 3.4471 28 1 2.4660 -9.2737 2.5788 29 1 0.3997 -7.8207 1.1798 30 1 2.0645 -8.0513 0.4911 31 1 3.7023 -3.8257 1.6632 32 1 1.9636 -3.8477 2.1918 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260966618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:36 Heat of formation + Delta-G solvation = 39.299088 kcal Electronic energy + Delta-G solvation = -12218.875019 eV Core-core repulsion = 10180.541238 eV Total energy + Delta-G solvation = -2038.333781 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79214 -37.14385 -33.00268 -29.95526 -26.49020 -26.06394 -24.76851 -23.56930 -21.42279 -19.26640 -18.55457 -16.32141 -15.92255 -15.23589 -14.70933 -14.33478 -13.81004 -13.04925 -12.34392 -12.17913 -12.04993 -11.92211 -11.61720 -11.16922 -10.92518 -10.80202 -10.54517 -10.43472 -10.07740 -9.92088 -9.60597 -9.24632 -9.00185 -8.37322 -8.19054 -5.99062 -4.00974 3.31928 3.39525 3.44052 4.45163 4.47571 4.66526 4.81270 4.94437 5.05233 5.35521 5.47631 5.54382 5.71836 5.74442 5.90249 5.92646 5.97145 6.08875 6.10955 6.22011 6.38349 6.44430 6.52412 6.77015 6.87560 7.07120 7.61618 7.69273 7.79700 7.99906 8.43833 9.05839 9.63110 11.12214 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.081334 B = 0.006948 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.176006 B = 4028.717713 C = 4131.528587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.099 4.099 11 C 0.002 3.998 12 N -0.477 5.477 13 C 0.019 3.981 14 C -0.124 4.124 15 C -0.143 4.143 16 C -0.129 4.129 17 C 0.014 3.986 18 H 0.259 0.741 19 H 0.019 0.981 20 H 0.016 0.984 21 H 0.084 0.916 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 -12.508 3.745 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.118 4.118 11 C -0.126 4.126 12 N -0.199 5.199 13 C -0.090 4.090 14 C -0.162 4.162 15 C -0.180 4.180 16 C -0.167 4.167 17 C -0.115 4.115 18 H 0.069 0.931 19 H 0.037 0.963 20 H 0.034 0.966 21 H 0.102 0.898 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.438 -12.785 3.573 13.713 hybrid contribution -0.424 1.368 0.383 1.483 sum 3.014 -11.417 3.955 12.453 Atomic orbital electron populations 1.69975 1.06075 1.26451 1.51206 1.25030 0.94825 0.99263 0.95422 0.86552 0.80178 0.83853 0.77532 1.19702 1.21044 1.21088 1.21278 0.93087 0.90884 1.50041 0.92549 1.19120 0.93423 0.91172 0.97196 1.23049 0.99434 0.94060 0.95263 1.23933 0.95259 0.97058 0.96398 1.68754 1.34251 1.08411 1.08509 1.23672 0.96493 0.93863 0.94984 1.22907 0.98467 0.95813 0.99046 1.22769 0.99555 0.97841 0.97883 1.22914 1.00636 0.95629 0.97526 1.23965 1.01385 0.87946 0.98180 0.93102 0.96251 0.96606 0.89757 0.91930 0.90666 0.91484 0.89524 0.92046 0.90552 0.91527 0.91991 0.89603 0.90501 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.53 9.10 -34.44 -0.31 -14.84 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.73 4.83 -27.88 -0.13 0.59 16 10 C -0.10 -2.08 3.78 -89.67 -0.34 -2.42 16 11 C 0.00 0.04 7.20 -2.76 -0.02 0.02 16 12 N -0.48 -8.18 6.20 -228.23 -1.42 -9.59 16 13 C 0.02 0.29 2.93 -66.90 -0.20 0.09 16 14 C -0.12 -1.58 7.89 -25.83 -0.20 -1.78 16 15 C -0.14 -1.56 8.09 -25.82 -0.21 -1.77 16 16 C -0.13 -1.63 7.49 -25.91 -0.19 -1.82 16 17 C 0.01 0.26 7.55 -2.57 -0.02 0.24 16 18 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 19 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.02 0.43 7.83 -51.93 -0.41 0.02 16 21 H 0.08 1.80 8.12 -51.93 -0.42 1.38 16 22 H 0.06 1.13 7.88 -51.93 -0.41 0.72 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.07 1.04 7.77 -51.93 -0.40 0.64 16 25 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 1.27 7.45 -51.93 -0.39 0.89 16 LS Contribution 263.03 15.07 3.96 3.96 Total: -1.00 -29.29 263.03 -8.84 -38.12 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -5.37 Total: -2.69 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -1.73 Total: -20.21 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.68 Total: -35.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.29 -8.84 -38.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.422 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds