Wall clock time and date at job start Mon Mar 30 2020 02:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48498 * 109.47433 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47040 * 300.00032 * 3 2 1 6 6 H 1.48502 * 109.47195 * 59.99815 * 3 2 1 7 7 C 1.37874 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00281 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99820 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46865 * 180.02562 * 9 7 2 11 11 C 1.53940 * 113.73150 * 185.00012 * 10 9 7 12 12 N 1.47965 * 86.30091 * 221.86181 * 11 10 9 13 13 C 1.46903 * 110.99929 * 137.63426 * 12 11 10 14 14 C 1.53775 * 113.61319 * 166.93319 * 13 12 11 15 15 C 1.53962 * 87.02167 * 220.05118 * 14 13 12 16 16 C 1.53785 * 113.60863 * 69.32802 * 13 12 11 17 17 C 1.48307 * 90.62901 * 24.68553 * 12 11 10 18 18 H 0.97005 * 120.00030 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.47448 * 60.00194 * 9 7 2 20 20 H 1.09000 * 109.46872 * 299.99789 * 9 7 2 21 21 H 1.09002 * 113.01275 * 316.63255 * 10 9 7 22 22 H 1.08996 * 113.75861 * 336.23616 * 11 10 9 23 23 H 1.09001 * 113.76042 * 107.49204 * 11 10 9 24 24 H 1.08997 * 112.85222 * 298.13184 * 13 12 11 25 25 H 1.09005 * 113.61868 * 334.56811 * 14 13 12 26 26 H 1.08999 * 113.61580 * 105.47384 * 14 13 12 27 27 H 1.08998 * 113.53331 * 270.81602 * 15 14 13 28 28 H 1.08995 * 113.74263 * 139.94208 * 15 14 13 29 29 H 1.09005 * 113.61192 * 254.52719 * 16 13 12 30 30 H 1.08996 * 113.61553 * 25.34671 * 16 13 12 31 31 H 1.08994 * 113.75777 * 220.99579 * 17 12 11 32 32 H 1.09000 * 113.86222 * 89.63881 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.5811 -5.0452 -0.1209 12 7 2.5455 -5.4934 0.9079 13 6 1.8922 -6.3554 1.9019 14 6 2.8801 -7.1091 2.8079 15 6 1.9422 -8.3237 2.6845 16 6 1.4728 -7.7270 1.3471 17 6 2.6793 -4.1047 1.4109 18 1 -0.4850 0.8401 -0.0004 19 1 0.6248 -2.5571 -0.8896 20 1 0.6241 -2.5566 0.8903 21 1 3.0772 -3.5122 -0.6865 22 1 0.5433 -5.0651 0.2117 23 1 1.7251 -5.5169 -1.0930 24 1 1.0999 -5.8450 2.4494 25 1 3.8583 -7.2648 2.3529 26 1 2.9417 -6.7047 3.8183 27 1 1.1639 -8.3519 3.4471 28 1 2.4660 -9.2737 2.5788 29 1 0.3997 -7.8207 1.1798 30 1 2.0645 -8.0513 0.4911 31 1 3.7023 -3.8257 1.6632 32 1 1.9636 -3.8477 2.1918 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:36 Heat of formation + Delta-G solvation = 20.801249 kcal Electronic energy + Delta-G solvation = -12219.677146 eV Core-core repulsion = 10180.541238 eV Total energy + Delta-G solvation = -2039.135907 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.15038 -38.37261 -35.13283 -31.81765 -28.15875 -27.35948 -25.99563 -25.28346 -22.96313 -20.54469 -20.02070 -18.49372 -17.20218 -16.73426 -16.14720 -16.05180 -15.27076 -14.43217 -14.04593 -13.73740 -13.54371 -13.36780 -13.23660 -12.81205 -12.43085 -12.34114 -12.32154 -11.82290 -11.56469 -11.29545 -11.10463 -11.04847 -10.77795 -10.54737 -9.70281 -8.19502 -6.30024 1.40160 1.40578 1.54029 2.41423 3.07651 3.13427 3.54794 3.79339 3.91628 3.91901 3.99555 4.06781 4.51072 4.52785 4.62596 4.80219 4.85478 4.90044 4.92635 4.99131 5.01459 5.07788 5.22914 5.32433 5.37942 5.47891 5.53662 5.69614 5.83331 6.22943 6.28566 6.86136 7.39137 8.92325 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.081334 B = 0.006948 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.176006 B = 4028.717713 C = 4131.528587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.036 3.964 10 C -0.105 4.105 11 C 0.013 3.987 12 N -0.469 5.469 13 C 0.002 3.998 14 C -0.122 4.122 15 C -0.128 4.128 16 C -0.126 4.126 17 C 0.019 3.981 18 H 0.263 0.737 19 H -0.007 1.007 20 H -0.009 1.009 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.092 0.908 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 -13.323 4.156 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.124 4.124 11 C -0.116 4.116 12 N -0.191 5.191 13 C -0.107 4.107 14 C -0.160 4.160 15 C -0.166 4.166 16 C -0.164 4.164 17 C -0.110 4.110 18 H 0.072 0.928 19 H 0.011 0.989 20 H 0.009 0.991 21 H 0.100 0.900 22 H 0.077 0.923 23 H 0.110 0.890 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.524 -13.618 3.986 14.893 hybrid contribution -0.793 1.604 0.253 1.807 sum 3.731 -12.015 4.239 13.275 Atomic orbital electron populations 1.70103 1.07808 1.27648 1.52062 1.25966 0.95725 1.03310 0.94850 0.85415 0.79126 0.78880 0.77734 1.18594 1.20404 1.20450 1.21675 0.93462 0.92139 1.49911 0.92240 1.18960 0.93726 0.92801 0.94635 1.22931 0.98619 0.93820 0.96994 1.23833 0.95070 0.95031 0.97663 1.68752 1.34188 1.07390 1.08773 1.23881 0.97228 0.94332 0.95305 1.22908 0.98189 0.96218 0.98658 1.22731 0.99194 0.97789 0.96852 1.22915 1.01032 0.93925 0.98491 1.23844 1.01332 0.89251 0.96525 0.92828 0.98901 0.99080 0.89997 0.92342 0.89016 0.92503 0.89700 0.91559 0.89445 0.89697 0.91478 0.89643 0.89845 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.53 -30.57 9.10 25.60 0.23 -30.34 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.04 1.93 4.83 29.85 0.14 2.07 16 10 C -0.10 -4.43 3.78 -10.15 -0.04 -4.47 16 11 C 0.01 0.45 7.20 86.41 0.62 1.07 16 12 N -0.47 -15.58 6.20 -875.99 -5.43 -21.01 16 13 C 0.00 0.05 2.93 45.44 0.13 0.18 16 14 C -0.12 -2.82 7.89 31.18 0.25 -2.58 16 15 C -0.13 -2.41 8.09 31.18 0.25 -2.16 16 16 C -0.13 -2.88 7.49 31.12 0.23 -2.65 16 17 C 0.02 0.72 7.55 86.34 0.65 1.37 16 18 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 19 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 20 H -0.01 -0.53 7.83 -2.39 -0.02 -0.54 16 21 H 0.08 3.50 8.12 -2.39 -0.02 3.48 16 22 H 0.06 2.12 7.88 -2.39 -0.02 2.10 16 23 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 24 H 0.06 1.73 7.77 -2.39 -0.02 1.71 16 25 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.05 2.18 7.45 -2.39 -0.02 2.16 16 Total: -1.00 -62.40 263.03 0.88 -61.53 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.06 Total: 7.04 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 2.94 Total: -37.10 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -5.15 Total: -78.10 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -62.40 0.88 -61.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.328 kcal (2) G-P(sol) polarization free energy of solvation -62.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds