Wall clock time and date at job start Mon Mar 30 2020 02:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00249 * 2 1 4 4 H 1.48496 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46926 * 299.99591 * 3 2 1 6 6 H 1.48496 * 109.46953 * 59.99117 * 3 2 1 7 7 C 1.37880 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99935 * 0.02562 * 7 2 1 10 10 H 1.08997 * 112.78843 * 49.18638 * 9 7 2 11 11 C 1.53514 * 113.47503 * 278.37955 * 9 7 2 12 12 C 1.53518 * 83.57518 * 219.21001 * 11 9 7 13 13 N 1.47476 * 113.47402 * 179.97438 * 9 7 2 14 14 C 1.46900 * 110.99931 * 253.46916 * 13 9 7 15 15 C 1.53881 * 110.03026 * 195.94923 * 14 13 9 16 16 C 1.54259 * 106.64050 * 240.68999 * 15 14 13 17 17 C 1.54967 * 104.16484 * 336.44866 * 16 15 14 18 18 C 1.54268 * 110.03371 * 78.78513 * 14 13 9 19 19 H 0.96999 * 119.99973 * 0.02562 * 1 2 3 20 20 H 1.08999 * 114.17213 * 105.56292 * 11 9 7 21 21 H 1.09006 * 114.34485 * 332.86750 * 11 9 7 22 22 H 1.08994 * 113.47802 * 271.25972 * 12 11 9 23 23 H 1.08996 * 113.47719 * 140.78894 * 12 11 9 24 24 H 1.08991 * 110.01847 * 317.33762 * 14 13 9 25 25 H 1.09002 * 110.03307 * 0.02562 * 15 14 13 26 26 H 1.09005 * 110.02688 * 121.38261 * 15 14 13 27 27 H 1.09004 * 110.48806 * 95.09613 * 16 15 14 28 28 H 1.08998 * 110.48878 * 217.73833 * 16 15 14 29 29 H 1.08997 * 110.71714 * 279.57928 * 17 16 15 30 30 H 1.08997 * 110.77198 * 156.22052 * 17 16 15 31 31 H 1.08995 * 110.48356 * 261.57306 * 18 14 13 32 32 H 1.09008 * 110.48318 * 24.08202 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.4714 -2.5365 -0.7603 11 6 0.7670 -2.9258 1.3935 12 6 1.1648 -4.3285 0.9128 13 7 2.1287 -3.6843 0.0005 14 6 2.1284 -4.3396 -1.3142 15 6 2.7086 -5.7599 -1.1954 16 6 3.9560 -5.8048 -2.1018 17 6 3.7123 -4.6789 -3.1383 18 6 3.0438 -3.5698 -2.2885 19 1 -0.4850 0.8400 -0.0004 20 1 -0.3034 -2.7957 1.5533 21 1 1.3741 -2.5470 2.2157 22 1 0.3623 -4.8540 0.3953 23 1 1.6368 -4.9348 1.6858 24 1 1.1136 -4.3827 -1.7094 25 1 2.9899 -5.9630 -0.1620 26 1 1.9751 -6.4922 -1.5329 27 1 4.8563 -5.6011 -1.5221 28 1 4.0318 -6.7720 -2.5987 29 1 3.0406 -5.0192 -3.9264 30 1 4.6555 -4.3287 -3.5576 31 1 2.4548 -2.9067 -2.9220 32 1 3.7951 -3.0028 -1.7387 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260971552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:59 Heat of formation + Delta-G solvation = 19.472740 kcal Electronic energy + Delta-G solvation = -12735.953727 eV Core-core repulsion = 10696.760211 eV Total energy + Delta-G solvation = -2039.193516 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.25603 -36.34963 -32.39609 -29.11886 -28.35145 -26.48345 -24.64146 -22.67177 -20.10487 -19.37781 -18.53897 -16.51122 -15.65524 -15.02344 -14.49785 -13.82092 -13.49199 -12.94010 -12.73720 -11.88443 -11.71449 -11.22591 -10.93305 -10.77295 -10.73660 -10.57377 -10.37627 -10.33367 -10.20745 -10.05384 -9.59609 -9.42220 -8.85738 -8.33925 -7.67485 -5.99313 -3.99772 3.32189 3.40096 3.45563 4.45275 5.00889 5.07800 5.14132 5.30929 5.43067 5.84801 5.87118 5.90232 6.03138 6.04538 6.09050 6.22583 6.25563 6.34739 6.40939 6.53248 6.61565 6.75535 6.86073 6.94037 7.04081 7.16393 7.45299 7.50494 7.98007 8.36107 8.49333 9.06268 9.63764 11.10816 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041073 B = 0.011542 C = 0.009691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.554208 B = 2425.390677 C = 2888.730179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.177 3.823 10 H 0.038 0.962 11 C -0.135 4.135 12 C -0.010 4.010 13 N -0.470 5.470 14 C 0.051 3.949 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.105 4.105 19 H 0.259 0.741 20 H 0.053 0.947 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.036 0.964 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -8.496 -2.878 9.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.529 4.529 8 H 0.082 0.918 9 C 0.070 3.930 10 H 0.056 0.944 11 C -0.174 4.174 12 C -0.140 4.140 13 N -0.193 5.193 14 C -0.058 4.058 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.163 4.163 18 C -0.143 4.143 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.093 0.907 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.340 -8.333 -2.735 9.785 hybrid contribution -0.592 0.785 -0.332 1.037 sum 3.748 -7.548 -3.067 8.968 Atomic orbital electron populations 1.69971 1.05956 1.26463 1.51055 1.24982 0.94830 0.99126 0.95283 0.86513 0.80240 0.83668 0.77445 1.19653 1.21164 1.21103 1.20981 0.93278 0.89229 1.49363 0.91849 1.20796 0.90364 0.89395 0.92488 0.94416 1.23154 0.99490 0.93553 1.01234 1.23695 0.94962 0.97784 0.97523 1.69173 1.38306 1.05756 1.06058 1.22719 0.97200 0.93262 0.92652 1.22177 0.96771 0.96368 1.00149 1.22294 0.98316 0.97873 0.97132 1.22518 0.99970 0.96393 0.97468 1.22237 0.98990 0.96656 0.96367 0.93120 0.92861 0.90652 0.93469 0.91975 0.94643 0.91369 0.92969 0.91772 0.92653 0.92277 0.92105 0.92099 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 13.28 55.43 0.74 -25.37 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.49 -13.67 9.06 -34.44 -0.31 -13.98 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.18 4.52 2.55 -72.58 -0.18 4.33 16 10 H 0.04 1.06 7.65 -51.93 -0.40 0.66 16 11 C -0.14 -3.17 8.00 -26.20 -0.21 -3.38 16 12 C -0.01 -0.21 6.88 -7.51 -0.05 -0.26 16 13 N -0.47 -10.41 5.79 -228.49 -1.32 -11.73 16 14 C 0.05 1.00 2.25 -66.59 -0.15 0.85 16 15 C -0.12 -1.87 6.16 -25.61 -0.16 -2.03 16 16 C -0.12 -1.68 6.84 -25.03 -0.17 -1.85 16 17 C -0.13 -1.85 6.91 -24.69 -0.17 -2.02 16 18 C -0.10 -1.96 6.29 -25.07 -0.16 -2.12 16 19 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 20 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 21 H 0.07 1.80 8.12 -51.93 -0.42 1.38 16 22 H 0.05 0.90 7.83 -51.93 -0.41 0.49 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.04 0.72 7.61 -51.93 -0.40 0.33 16 25 H 0.07 1.12 7.53 -51.93 -0.39 0.73 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.64 8.05 -51.92 -0.42 1.22 16 LS Contribution 258.36 15.07 3.89 3.89 Total: -1.00 -28.57 258.36 -8.73 -37.30 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.36 Total: -1.81 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -1.66 Total: -18.89 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.59 Total: -37.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.57 -8.73 -37.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260971552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.772 kcal (2) G-P(sol) polarization free energy of solvation -28.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds