Wall clock time and date at job start Mon Mar 30 2020 02:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53935 * 113.73611 * 273.76902 * 11 10 9 13 13 N 1.48181 * 86.10469 * 221.95628 * 12 11 10 14 14 C 1.46898 * 111.07347 * 137.51624 * 13 12 11 15 15 C 1.53008 * 117.49665 * 149.18867 * 14 13 12 16 16 C 1.53004 * 60.00001 * 252.51497 * 15 14 13 17 17 C 1.47961 * 90.79696 * 24.59739 * 13 12 11 18 18 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 20 20 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 21 21 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 22 22 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 23 23 H 1.09006 * 112.93811 * 45.33135 * 11 10 9 24 24 H 1.08998 * 113.75751 * 336.23999 * 12 11 10 25 25 H 1.09005 * 113.76340 * 107.59763 * 12 11 10 26 26 H 1.08996 * 115.55429 * 294.89678 * 14 13 12 27 27 H 1.09000 * 117.50013 * 359.97438 * 15 14 13 28 28 H 1.09002 * 117.49646 * 145.03065 * 15 14 13 29 29 H 1.09002 * 117.49879 * 252.51190 * 16 15 14 30 30 H 1.08998 * 117.50045 * 107.49220 * 16 15 14 31 31 H 1.09007 * 113.75937 * 221.08136 * 17 13 12 32 32 H 1.08996 * 113.85796 * 89.73718 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 1.0910 -5.4772 1.4083 13 7 1.4925 -6.8244 0.9398 14 6 2.2621 -7.5343 1.9701 15 6 2.1464 -9.0594 2.0129 16 6 1.4782 -8.2108 3.0966 17 6 2.3891 -6.2272 -0.0744 18 1 -0.4850 0.8400 -0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6247 -2.5564 0.8919 21 1 2.8714 -3.6047 -0.8890 22 1 2.8726 -3.6039 0.8910 23 1 0.6565 -5.0023 -0.7116 24 1 1.7244 -5.0815 2.2022 25 1 0.0269 -5.3857 1.6263 26 1 3.2274 -7.0953 2.2219 27 1 1.4989 -9.5359 1.2768 28 1 3.0358 -9.6240 2.2929 29 1 1.9281 -8.2171 4.0895 30 1 0.3916 -8.1291 3.0732 31 1 2.3604 -6.7340 -1.0390 32 1 3.4036 -6.0509 0.2832 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260978559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:15 Heat of formation + Delta-G solvation = 41.401884 kcal Electronic energy + Delta-G solvation = -11968.805337 eV Core-core repulsion = 9930.562740 eV Total energy + Delta-G solvation = -2038.242597 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74910 -36.18689 -33.50700 -31.19912 -27.27886 -25.79652 -24.29349 -22.29073 -21.27033 -19.98941 -19.06992 -16.43240 -16.10463 -15.21302 -14.63268 -14.41212 -14.02459 -13.04976 -12.69085 -12.39095 -12.20938 -11.54647 -11.53220 -11.12338 -11.01486 -10.72865 -10.44539 -10.30379 -10.13588 -9.96496 -9.61452 -9.24711 -9.03665 -8.49381 -8.32237 -5.97414 -3.99699 3.32024 3.39464 3.43552 3.74322 4.04377 4.47689 4.87117 4.92416 5.04682 5.09242 5.18323 5.38304 5.59935 5.63113 5.71587 5.81379 5.91410 6.01356 6.13670 6.17011 6.22871 6.39983 6.46279 6.69315 6.96003 7.14474 7.34449 7.71869 7.87247 8.03626 8.46128 9.08052 9.64325 11.13847 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.082239 B = 0.006117 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.387936 B = 4576.126751 C = 4609.717168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.102 4.102 11 C -0.110 4.110 12 C 0.015 3.985 13 N -0.460 5.460 14 C -0.028 4.028 15 C -0.165 4.165 16 C -0.170 4.170 17 C 0.007 3.993 18 H 0.259 0.741 19 H 0.016 0.984 20 H 0.016 0.984 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.094 0.906 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 -13.549 3.335 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.140 4.140 11 C -0.129 4.129 12 C -0.113 4.113 13 N -0.182 5.182 14 C -0.138 4.138 15 C -0.203 4.203 16 C -0.208 4.208 17 C -0.122 4.122 18 H 0.069 0.931 19 H 0.034 0.966 20 H 0.034 0.966 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.112 0.888 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.287 -13.927 3.158 14.654 hybrid contribution 1.101 1.463 0.381 1.870 sum 4.388 -12.465 3.539 13.680 Atomic orbital electron populations 1.69974 1.06038 1.26411 1.51082 1.25025 0.94824 0.99204 0.95415 0.86571 0.80121 0.83948 0.77567 1.19790 1.21017 1.21048 1.21325 0.93026 0.91226 1.50260 0.92768 1.19079 0.93983 0.91194 0.97231 1.21642 0.98737 0.93459 1.00192 1.23086 0.98547 0.94590 0.96658 1.23949 1.01881 0.87938 0.97547 1.68387 1.27062 1.14866 1.07921 1.23109 0.97896 0.94935 0.97814 1.22953 1.02686 0.92761 1.01893 1.22943 1.00103 1.04085 0.93621 1.24001 0.95848 0.95417 0.96933 0.93100 0.96607 0.96568 0.93048 0.93504 0.88817 0.91234 0.89736 0.89408 0.88388 0.89125 0.88959 0.88398 0.90005 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.10 4.99 -26.73 -0.13 -2.24 16 11 C -0.11 -1.91 3.82 -89.69 -0.34 -2.25 16 12 C 0.01 0.24 7.56 -2.64 -0.02 0.22 16 13 N -0.46 -6.93 6.41 -230.07 -1.47 -8.41 16 14 C -0.03 -0.37 4.85 -67.71 -0.33 -0.70 16 15 C -0.17 -1.83 10.46 -26.72 -0.28 -2.11 16 16 C -0.17 -1.94 10.46 -26.73 -0.28 -2.21 16 17 C 0.01 0.10 7.55 -2.76 -0.02 0.08 16 18 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 19 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 20 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.05 0.95 7.88 -51.93 -0.41 0.54 16 23 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 24 H 0.07 1.14 7.71 -51.93 -0.40 0.74 16 25 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.09 1.13 7.83 -51.93 -0.41 0.72 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 32 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 LS Contribution 268.34 15.07 4.04 4.04 Total: -1.00 -29.87 268.34 -9.05 -38.92 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.38 Total: -2.47 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -1.95 Total: -22.42 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: -0.74 Total: -34.85 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.87 -9.05 -38.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.321 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds