Wall clock time and date at job start Mon Mar 30 2020 02:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53935 * 113.73611 * 273.76902 * 11 10 9 13 13 N 1.48181 * 86.10469 * 221.95628 * 12 11 10 14 14 C 1.46898 * 111.07347 * 137.51624 * 13 12 11 15 15 C 1.53008 * 117.49665 * 149.18867 * 14 13 12 16 16 C 1.53004 * 60.00001 * 252.51497 * 15 14 13 17 17 C 1.47961 * 90.79696 * 24.59739 * 13 12 11 18 18 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 20 20 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 21 21 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 22 22 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 23 23 H 1.09006 * 112.93811 * 45.33135 * 11 10 9 24 24 H 1.08998 * 113.75751 * 336.23999 * 12 11 10 25 25 H 1.09005 * 113.76340 * 107.59763 * 12 11 10 26 26 H 1.08996 * 115.55429 * 294.89678 * 14 13 12 27 27 H 1.09000 * 117.50013 * 359.97438 * 15 14 13 28 28 H 1.09002 * 117.49646 * 145.03065 * 15 14 13 29 29 H 1.09002 * 117.49879 * 252.51190 * 16 15 14 30 30 H 1.08998 * 117.50045 * 107.49220 * 16 15 14 31 31 H 1.09007 * 113.75937 * 221.08136 * 17 13 12 32 32 H 1.08996 * 113.85796 * 89.73718 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 1.0910 -5.4772 1.4083 13 7 1.4925 -6.8244 0.9398 14 6 2.2621 -7.5343 1.9701 15 6 2.1464 -9.0594 2.0129 16 6 1.4782 -8.2108 3.0966 17 6 2.3891 -6.2272 -0.0744 18 1 -0.4850 0.8400 -0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6247 -2.5564 0.8919 21 1 2.8714 -3.6047 -0.8890 22 1 2.8726 -3.6039 0.8910 23 1 0.6565 -5.0023 -0.7116 24 1 1.7244 -5.0815 2.2022 25 1 0.0269 -5.3857 1.6263 26 1 3.2274 -7.0953 2.2219 27 1 1.4989 -9.5359 1.2768 28 1 3.0358 -9.6240 2.2929 29 1 1.9281 -8.2171 4.0895 30 1 0.3916 -8.1291 3.0732 31 1 2.3604 -6.7340 -1.0390 32 1 3.4036 -6.0509 0.2832 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260978559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:15 Heat of formation + Delta-G solvation = 22.526194 kcal Electronic energy + Delta-G solvation = -11969.623848 eV Core-core repulsion = 9930.562740 eV Total energy + Delta-G solvation = -2039.061108 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.97583 -37.26588 -35.51438 -33.09230 -28.97896 -27.04422 -26.07519 -23.16122 -22.99373 -21.23187 -20.48323 -18.42841 -17.36161 -16.63992 -16.36074 -15.70631 -15.42914 -14.44315 -14.33810 -14.05638 -13.51786 -13.38504 -12.90995 -12.70890 -12.36683 -12.30313 -12.14575 -12.00422 -11.47012 -11.21314 -11.12533 -10.95876 -10.86653 -10.54502 -9.74063 -8.19008 -6.30403 1.40119 1.40215 1.53661 2.41380 2.78278 2.93457 3.13931 3.65096 3.79137 3.98778 4.06205 4.11947 4.47803 4.51088 4.59023 4.66631 4.77110 4.77533 4.87983 4.92810 5.00266 5.06214 5.23872 5.29584 5.30166 5.39050 5.54262 5.78187 5.87228 6.18784 6.26984 6.87557 7.39052 8.92863 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.082239 B = 0.006117 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.387936 B = 4576.126751 C = 4609.717168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.087 4.087 11 C -0.115 4.115 12 C 0.016 3.984 13 N -0.464 5.464 14 C -0.052 4.052 15 C -0.150 4.150 16 C -0.167 4.167 17 C 0.020 3.980 18 H 0.263 0.737 19 H -0.011 1.011 20 H -0.009 1.009 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.479 -14.191 3.713 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.125 4.125 11 C -0.134 4.134 12 C -0.112 4.112 13 N -0.186 5.186 14 C -0.161 4.161 15 C -0.187 4.187 16 C -0.204 4.204 17 C -0.109 4.109 18 H 0.072 0.928 19 H 0.007 0.993 20 H 0.010 0.990 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.101 0.899 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.849 -14.588 3.535 15.774 hybrid contribution 0.579 1.631 0.271 1.751 sum 5.428 -12.957 3.806 14.554 Atomic orbital electron populations 1.70108 1.07837 1.27660 1.51870 1.25989 0.95747 1.03375 0.94775 0.85408 0.79092 0.78812 0.77789 1.18561 1.20358 1.20377 1.21773 0.93528 0.92551 1.50276 0.92265 1.18981 0.94427 0.93020 0.94683 1.21420 0.97590 0.93017 1.00469 1.22990 0.98833 0.94128 0.97433 1.23872 1.01507 0.89089 0.96748 1.68351 1.27748 1.13942 1.08583 1.23213 0.98243 0.96226 0.98434 1.23027 1.03225 0.91324 1.01163 1.23017 0.99656 1.03446 0.94299 1.23950 0.95704 0.93508 0.97721 0.92811 0.99296 0.99016 0.92685 0.93100 0.89934 0.91316 0.90469 0.88983 0.88770 0.86908 0.87210 0.89249 0.88662 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.58 4.99 30.59 0.15 -3.43 16 11 C -0.11 -3.98 3.82 -10.15 -0.04 -4.02 16 12 C 0.02 0.52 7.56 86.37 0.65 1.18 16 13 N -0.46 -13.37 6.41 -881.81 -5.65 -19.02 16 14 C -0.05 -1.25 4.85 44.92 0.22 -1.03 16 15 C -0.15 -2.90 10.46 30.60 0.32 -2.58 16 16 C -0.17 -3.44 10.46 30.60 0.32 -3.12 16 17 C 0.02 0.55 7.55 86.41 0.65 1.20 16 18 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 19 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 20 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 21 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.05 2.03 7.88 -2.39 -0.02 2.02 16 23 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 24 H 0.07 2.22 7.71 -2.39 -0.02 2.20 16 25 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 26 H 0.09 2.15 7.83 -2.39 -0.02 2.13 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 28 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.08 2.02 7.68 -2.39 -0.02 2.00 16 Total: -1.00 -63.66 268.34 0.84 -62.82 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.06 Total: 7.95 kcal Atomic # 6 Polarization: -44.14 SS G_CDS: 3.12 Total: -41.02 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -5.37 Total: -76.42 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.66 0.84 -62.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.349 kcal (2) G-P(sol) polarization free energy of solvation -63.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds