Wall clock time and date at job start Mon Mar 30 2020 02:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99714 * 2 1 4 4 H 1.48507 * 109.47117 * 239.99965 * 3 2 1 5 5 H 1.48495 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46958 * 120.00459 * 3 2 1 7 7 C 1.37876 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46903 * 184.39947 * 9 7 2 11 11 H 1.08990 * 112.74830 * 44.13858 * 10 9 7 12 12 C 1.53511 * 113.47422 * 273.28358 * 10 9 7 13 13 C 1.53509 * 83.58046 * 219.21434 * 12 10 9 14 14 N 1.47486 * 87.93012 * 26.02713 * 13 12 10 15 15 C 1.46895 * 111.00009 * 221.30293 * 14 13 12 16 16 C 1.53790 * 113.61194 * 279.75504 * 15 14 13 17 17 C 1.53778 * 87.08352 * 220.02158 * 16 15 14 18 18 C 1.53782 * 87.17265 * 25.39016 * 17 16 15 19 19 H 0.97001 * 120.00226 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46745 * 64.39896 * 9 7 2 21 21 H 1.09000 * 109.47046 * 304.39988 * 9 7 2 22 22 H 1.09003 * 114.17593 * 332.86022 * 12 10 9 23 23 H 1.09001 * 114.17163 * 105.37785 * 12 10 9 24 24 H 1.09001 * 113.47778 * 271.26756 * 13 12 10 25 25 H 1.08996 * 113.48315 * 140.79163 * 13 12 10 26 26 H 1.08995 * 112.85733 * 50.95276 * 15 14 13 27 27 H 1.08999 * 113.61513 * 105.47115 * 16 15 14 28 28 H 1.08996 * 113.68634 * 334.58173 * 16 15 14 29 29 H 1.08993 * 113.61785 * 139.98042 * 17 16 15 30 30 H 1.09000 * 113.61707 * 270.80467 * 17 16 15 31 31 H 1.08997 * 113.61384 * 89.15895 * 18 17 16 32 32 H 1.08999 * 113.61424 * 220.06177 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2417 -3.6599 0.1095 11 1 3.0160 -3.4839 0.8560 12 6 2.7917 -4.1250 -1.2462 13 6 2.6534 -5.5234 -0.6282 14 7 1.5911 -4.9774 0.2371 15 6 1.7113 -5.4932 1.6073 16 6 1.1333 -6.9070 1.7862 17 6 0.5807 -6.4250 3.1378 18 6 0.5986 -5.0033 2.5519 19 1 -0.4850 0.8400 0.0004 20 1 0.6845 -2.5916 -0.9272 21 1 0.5669 -2.5238 0.8477 22 1 2.1226 -3.9403 -2.0865 23 1 3.8199 -3.8190 -1.4394 24 1 3.5383 -5.8450 -0.0790 25 1 2.2965 -6.2757 -1.3316 26 1 2.7146 -5.3766 2.0171 27 1 1.8947 -7.6817 1.8770 28 1 0.3583 -7.1581 1.0621 29 1 -0.4211 -6.7944 3.3568 30 1 1.2738 -6.5639 3.9676 31 1 -0.3229 -4.7316 2.0370 32 1 0.9290 -4.2433 3.2599 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:48 Heat of formation + Delta-G solvation = 43.496512 kcal Electronic energy + Delta-G solvation = -12468.121008 eV Core-core repulsion = 10429.969241 eV Total energy + Delta-G solvation = -2038.151767 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.86665 -37.04899 -32.93078 -29.36710 -28.03234 -25.42735 -24.29564 -23.15872 -21.44360 -19.18558 -18.72952 -16.46063 -15.86046 -15.13357 -14.58371 -13.82939 -13.64826 -13.23138 -12.43043 -12.07720 -11.92501 -11.60542 -11.33213 -11.03636 -10.98177 -10.84056 -10.53453 -10.29552 -10.20028 -9.87755 -9.51106 -9.12186 -8.95054 -8.29347 -8.19186 -5.94810 -3.96920 3.35368 3.39894 3.42035 4.45404 4.66332 4.82182 4.98011 5.15133 5.20747 5.35105 5.40036 5.50612 5.78399 5.86945 5.93251 6.03447 6.13397 6.14536 6.16091 6.35692 6.49161 6.55662 6.66470 6.79801 6.84352 7.13105 7.65663 7.79514 7.97098 8.12813 8.49061 9.09935 9.66068 11.16391 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046317 B = 0.009251 C = 0.008258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.385817 B = 3025.967390 C = 3389.885464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.052 0.948 9 C 0.043 3.957 10 C 0.043 3.957 11 H 0.062 0.938 12 C -0.136 4.136 13 C -0.006 4.006 14 N -0.462 5.462 15 C 0.023 3.977 16 C -0.127 4.127 17 C -0.144 4.144 18 C -0.121 4.121 19 H 0.260 0.740 20 H 0.019 0.981 21 H 0.022 0.978 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 -10.944 2.672 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.006 3.994 10 C -0.065 4.065 11 H 0.080 0.920 12 C -0.174 4.174 13 C -0.135 4.135 14 N -0.185 5.185 15 C -0.087 4.087 16 C -0.164 4.164 17 C -0.182 4.182 18 C -0.159 4.159 19 H 0.070 0.930 20 H 0.038 0.962 21 H 0.040 0.960 22 H 0.107 0.893 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.747 -10.933 2.540 11.556 hybrid contribution 1.378 1.030 0.385 1.762 sum 4.124 -9.904 2.925 11.119 Atomic orbital electron populations 1.69965 1.05981 1.26571 1.50766 1.24987 0.94806 0.99060 0.95469 0.86692 0.79593 0.83357 0.78533 1.20277 1.21310 1.20374 1.21161 0.92858 0.91062 1.50634 0.92953 1.18929 0.93308 0.89493 0.97662 1.23531 0.96744 0.91252 0.95002 0.91996 1.23146 1.00963 0.94536 0.98764 1.23658 0.94365 0.98097 0.97348 1.69200 1.37912 1.05150 1.06235 1.23644 0.97365 0.96038 0.91647 1.22896 1.00351 0.95733 0.97458 1.22761 1.00938 0.97799 0.96700 1.22871 0.99711 0.95704 0.97581 0.93010 0.96241 0.95953 0.89312 0.91790 0.92647 0.90878 0.92063 0.92455 0.89581 0.91568 0.90777 0.89080 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.77 9.10 -34.44 -0.31 -15.08 16 8 H 0.05 1.44 7.75 -52.49 -0.41 1.04 16 9 C 0.04 1.15 5.08 -27.88 -0.14 1.01 16 10 C 0.04 0.92 2.96 -71.42 -0.21 0.71 16 11 H 0.06 1.34 7.75 -51.93 -0.40 0.94 16 12 C -0.14 -2.54 8.00 -26.20 -0.21 -2.74 16 13 C -0.01 -0.09 7.63 -7.53 -0.06 -0.15 16 14 N -0.46 -8.77 6.12 -227.40 -1.39 -10.16 16 15 C 0.02 0.38 2.71 -66.81 -0.18 0.19 16 16 C -0.13 -1.75 7.78 -25.92 -0.20 -1.95 16 17 C -0.14 -1.88 8.08 -25.92 -0.21 -2.09 16 18 C -0.12 -2.00 7.89 -25.82 -0.20 -2.20 16 19 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 20 H 0.02 0.55 7.87 -51.93 -0.41 0.14 16 21 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.09 1.72 7.94 -51.93 -0.41 1.30 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.06 0.83 7.86 -51.93 -0.41 0.42 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 263.54 15.07 3.97 3.97 Total: -1.00 -29.82 263.54 -8.92 -38.73 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.38 Total: -2.20 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.83 Total: -20.72 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.66 Total: -36.60 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.82 -8.92 -38.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.229 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds