Wall clock time and date at job start Mon Mar 30 2020 02:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99714 * 2 1 4 4 H 1.48507 * 109.47117 * 239.99965 * 3 2 1 5 5 H 1.48495 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46958 * 120.00459 * 3 2 1 7 7 C 1.37876 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46903 * 184.39947 * 9 7 2 11 11 H 1.08990 * 112.74830 * 44.13858 * 10 9 7 12 12 C 1.53511 * 113.47422 * 273.28358 * 10 9 7 13 13 C 1.53509 * 83.58046 * 219.21434 * 12 10 9 14 14 N 1.47486 * 87.93012 * 26.02713 * 13 12 10 15 15 C 1.46895 * 111.00009 * 221.30293 * 14 13 12 16 16 C 1.53790 * 113.61194 * 279.75504 * 15 14 13 17 17 C 1.53778 * 87.08352 * 220.02158 * 16 15 14 18 18 C 1.53782 * 87.17265 * 25.39016 * 17 16 15 19 19 H 0.97001 * 120.00226 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46745 * 64.39896 * 9 7 2 21 21 H 1.09000 * 109.47046 * 304.39988 * 9 7 2 22 22 H 1.09003 * 114.17593 * 332.86022 * 12 10 9 23 23 H 1.09001 * 114.17163 * 105.37785 * 12 10 9 24 24 H 1.09001 * 113.47778 * 271.26756 * 13 12 10 25 25 H 1.08996 * 113.48315 * 140.79163 * 13 12 10 26 26 H 1.08995 * 112.85733 * 50.95276 * 15 14 13 27 27 H 1.08999 * 113.61513 * 105.47115 * 16 15 14 28 28 H 1.08996 * 113.68634 * 334.58173 * 16 15 14 29 29 H 1.08993 * 113.61785 * 139.98042 * 17 16 15 30 30 H 1.09000 * 113.61707 * 270.80467 * 17 16 15 31 31 H 1.08997 * 113.61384 * 89.15895 * 18 17 16 32 32 H 1.08999 * 113.61424 * 220.06177 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2417 -3.6599 0.1095 11 1 3.0160 -3.4839 0.8560 12 6 2.7917 -4.1250 -1.2462 13 6 2.6534 -5.5234 -0.6282 14 7 1.5911 -4.9774 0.2371 15 6 1.7113 -5.4932 1.6073 16 6 1.1333 -6.9070 1.7862 17 6 0.5807 -6.4250 3.1378 18 6 0.5986 -5.0033 2.5519 19 1 -0.4850 0.8400 0.0004 20 1 0.6845 -2.5916 -0.9272 21 1 0.5669 -2.5238 0.8477 22 1 2.1226 -3.9403 -2.0865 23 1 3.8199 -3.8190 -1.4394 24 1 3.5383 -5.8450 -0.0790 25 1 2.2965 -6.2757 -1.3316 26 1 2.7146 -5.3766 2.0171 27 1 1.8947 -7.6817 1.8770 28 1 0.3583 -7.1581 1.0621 29 1 -0.4211 -6.7944 3.3568 30 1 1.2738 -6.5639 3.9676 31 1 -0.3229 -4.7316 2.0370 32 1 0.9290 -4.2433 3.2599 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:48 Heat of formation + Delta-G solvation = 23.995860 kcal Electronic energy + Delta-G solvation = -12468.966620 eV Core-core repulsion = 10429.969241 eV Total energy + Delta-G solvation = -2038.997379 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.30248 -38.35297 -35.12191 -31.37412 -29.46743 -26.88900 -26.03767 -24.42299 -23.26133 -20.56296 -20.19120 -18.51748 -17.40086 -16.70170 -16.25080 -15.36487 -15.27050 -14.55789 -14.23392 -13.87771 -13.32282 -13.07301 -12.91571 -12.87017 -12.59801 -12.42552 -12.27099 -12.00954 -11.57936 -11.33467 -11.12789 -10.92632 -10.73926 -10.49867 -9.68321 -8.18116 -6.29507 1.39290 1.42773 1.50624 2.40756 3.14310 3.22116 3.53877 3.81123 3.86195 3.97261 4.00151 4.08458 4.49211 4.53075 4.62755 4.79172 4.86557 4.90839 4.95713 5.03984 5.04937 5.07482 5.29303 5.34230 5.38759 5.49976 5.58904 5.68196 5.87125 6.21720 6.46112 6.87470 7.39132 8.93803 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046317 B = 0.009251 C = 0.008258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.385817 B = 3025.967390 C = 3389.885464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.055 3.945 10 C 0.040 3.960 11 H 0.060 0.940 12 C -0.134 4.134 13 C 0.012 3.988 14 N -0.482 5.482 15 C 0.012 3.988 16 C -0.113 4.113 17 C -0.125 4.125 18 C -0.137 4.137 19 H 0.263 0.737 20 H -0.013 1.013 21 H -0.015 1.015 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -12.026 2.960 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.017 3.983 10 C -0.069 4.069 11 H 0.078 0.922 12 C -0.172 4.172 13 C -0.117 4.117 14 N -0.205 5.205 15 C -0.097 4.097 16 C -0.151 4.151 17 C -0.163 4.163 18 C -0.175 4.175 19 H 0.071 0.929 20 H 0.005 0.995 21 H 0.003 0.997 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.563 -12.037 2.826 13.180 hybrid contribution 0.759 1.366 0.305 1.593 sum 5.323 -10.671 3.131 12.329 Atomic orbital electron populations 1.70121 1.07897 1.27715 1.51663 1.25985 0.95722 1.03346 0.94798 0.85503 0.78257 0.78077 0.79216 1.18973 1.20904 1.19222 1.21569 0.93406 0.92101 1.50475 0.92156 1.18710 0.93519 0.91805 0.94254 1.23314 0.95542 0.90880 0.97164 0.92231 1.23102 1.01274 0.96208 0.96604 1.23636 0.94375 0.96947 0.96727 1.69127 1.39156 1.03929 1.08296 1.23831 0.97603 0.98070 0.90227 1.22815 1.00531 0.94365 0.97339 1.22720 1.02303 0.94242 0.97035 1.22899 0.98720 0.97901 0.97969 0.92868 0.99513 0.99697 0.90721 0.90141 0.90287 0.88894 0.91378 0.89796 0.90192 0.90285 0.88688 0.91948 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.56 13.29 21.45 0.28 -58.27 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.54 -31.28 9.10 25.60 0.23 -31.05 16 8 H 0.06 3.33 7.75 -2.91 -0.02 3.31 16 9 C 0.05 3.04 5.08 29.85 0.15 3.19 16 10 C 0.04 1.73 2.96 42.19 0.12 1.85 16 11 H 0.06 2.59 7.75 -2.39 -0.02 2.57 16 12 C -0.13 -4.87 8.00 30.94 0.25 -4.62 16 13 C 0.01 0.35 7.63 83.58 0.64 0.99 16 14 N -0.48 -18.10 6.12 -873.35 -5.35 -23.44 16 15 C 0.01 0.38 2.71 45.51 0.12 0.50 16 16 C -0.11 -2.80 7.78 31.12 0.24 -2.56 16 17 C -0.13 -3.00 8.08 31.12 0.25 -2.75 16 18 C -0.14 -4.59 7.89 31.18 0.25 -4.34 16 19 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 20 H -0.01 -0.82 7.87 -2.39 -0.02 -0.84 16 21 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 22 H 0.07 2.90 7.94 -2.39 -0.02 2.88 16 23 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 24 H 0.08 2.05 7.86 -2.39 -0.02 2.03 16 25 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.07 2.10 7.85 -2.39 -0.02 2.08 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -66.05 263.54 0.74 -65.31 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.06 Total: 7.75 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 2.72 Total: -38.37 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -5.06 Total: -81.71 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.05 0.74 -65.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.306 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds