Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.39894 * 119.99960 * 179.72221 * 2 1 3 5 5 C 1.39245 * 125.54040 * 4.71765 * 4 2 1 6 6 C 1.39706 * 107.50116 * 179.89657 * 5 4 2 7 7 C 1.40227 * 126.60168 * 180.13585 * 6 5 4 8 8 H 1.07998 * 120.00382 * 180.26802 * 7 6 5 9 9 C 1.40137 * 119.99929 * 0.26893 * 7 6 5 10 10 N 1.30776 * 119.99987 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00095 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46844 * 90.00085 * 11 9 7 13 13 H 1.48500 * 109.47349 * 209.99673 * 11 9 7 14 14 H 1.48494 * 109.47501 * 329.99920 * 11 9 7 15 15 N 1.37530 * 106.80249 * 0.36181 * 6 5 4 16 16 C 1.46494 * 126.14317 * 179.80917 * 15 6 5 17 17 N 1.31701 * 125.53984 * 185.02839 * 4 2 1 18 18 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 19 19 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 20 20 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 21 21 H 1.09003 * 109.47269 * 89.99349 * 3 2 1 22 22 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 23 23 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 24 24 H 1.07997 * 126.25076 * 0.02562 * 5 4 2 25 25 H 0.96993 * 120.00362 * 180.02562 * 10 9 7 26 26 H 1.08995 * 109.47581 * 269.98112 * 16 15 6 27 27 H 1.09004 * 109.47125 * 29.98251 * 16 15 6 28 28 H 1.09001 * 109.46941 * 149.97970 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1645 -1.2115 0.0059 5 6 1.5913 -2.4775 -0.0812 6 6 2.6290 -3.4121 -0.0435 7 6 2.5007 -4.8070 -0.1069 8 1 3.3799 -5.4328 -0.0641 9 6 1.2315 -5.3892 -0.2259 10 7 0.1668 -4.6315 -0.2773 11 14 1.0606 -7.2473 -0.3112 12 1 0.9093 -7.7940 1.0613 13 1 -0.1358 -7.5979 -1.1181 14 1 2.2720 -7.8274 -0.9443 15 7 3.8004 -2.7010 0.0731 16 6 5.1498 -3.2657 0.1533 17 7 3.4718 -1.3403 0.1004 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 2.3791 1.5835 1.0277 22 1 3.1499 1.1384 -0.5138 23 1 1.6084 2.0284 -0.5138 24 1 0.5371 -2.6968 -0.1649 25 1 -0.7116 -5.0344 -0.3593 26 1 5.4070 -3.4455 1.1971 27 1 5.1832 -4.2065 -0.3963 28 1 5.8631 -2.5655 -0.2813 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261015172.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = 57.916925 kcal Electronic energy + Delta-G solvation = -12257.939403 eV Core-core repulsion = 10116.872608 eV Total energy + Delta-G solvation = -2141.066794 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.76544 -37.18129 -35.47782 -32.77372 -30.75852 -29.03649 -27.19000 -26.80705 -24.44720 -21.49516 -19.96333 -18.78253 -17.50281 -16.03049 -15.97411 -15.88133 -15.31033 -15.16001 -14.27318 -14.07909 -13.38628 -13.30303 -13.17073 -12.85856 -12.83732 -12.79737 -12.55599 -12.13948 -11.74014 -11.31548 -10.52237 -10.31189 -9.00606 -8.48621 -7.94192 -6.47840 1.31701 1.43873 1.59014 1.87844 2.09565 2.27149 2.71035 3.01294 3.41578 4.26194 4.42397 4.50275 4.61069 4.64128 4.74090 4.91723 4.93635 4.98031 5.12543 5.29821 5.53536 5.68571 5.98800 6.33535 6.43671 6.67846 6.97007 7.19227 7.34422 7.85897 8.42646 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.041416 B = 0.012207 C = 0.009514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.913036 B = 2293.218629 C = 2942.282661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.632 5.632 3 C 0.117 3.883 4 C 0.320 3.680 5 C -0.424 4.424 6 C 0.241 3.759 7 C -0.478 4.478 8 H 0.086 0.914 9 C 0.032 3.968 10 N -0.814 5.814 11 Si 1.005 2.995 12 H -0.263 1.263 13 H -0.267 1.267 14 H -0.255 1.255 15 N -0.452 5.452 16 C 0.131 3.869 17 N -0.453 5.453 18 H 0.040 0.960 19 H 0.045 0.955 20 H 0.090 0.910 21 H 0.037 0.963 22 H 0.043 0.957 23 H 0.087 0.913 24 H 0.147 0.853 25 H 0.286 0.714 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 1.521 -0.057 1.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.357 5.357 3 C -0.026 4.026 4 C 0.068 3.932 5 C -0.456 4.456 6 C 0.121 3.879 7 C -0.514 4.514 8 H 0.104 0.896 9 C -0.184 4.184 10 N -0.441 5.441 11 Si 0.825 3.175 12 H -0.187 1.187 13 H -0.192 1.192 14 H -0.179 1.179 15 N -0.244 5.244 16 C -0.011 4.011 17 N -0.287 5.287 18 H 0.059 0.941 19 H 0.064 0.936 20 H 0.109 0.891 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.106 0.894 24 H 0.164 0.836 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.855 2.246 0.032 2.404 hybrid contribution -0.793 -1.029 -0.061 1.300 sum 0.062 1.217 -0.030 1.219 Atomic orbital electron populations 1.21422 0.77939 1.02273 1.00628 1.45556 1.04856 1.01165 1.84138 1.21387 0.96389 0.84519 1.00292 1.19345 0.90786 0.87510 0.95598 1.21772 1.00435 0.88762 1.34636 1.19075 0.84304 0.93188 0.91302 1.19027 0.95050 0.89401 1.47891 0.89608 1.26841 0.94086 1.06145 0.91354 1.69834 1.00059 1.39092 1.35080 0.84863 0.79084 0.74289 0.79288 1.18723 1.19181 1.17901 1.48325 1.05616 1.02489 1.67923 1.21376 0.79858 0.98371 1.01478 1.76697 1.12610 0.96040 1.43348 0.94132 0.93603 0.89107 0.94492 0.93764 0.89412 0.83591 0.90294 0.92711 0.90185 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.34 10.40 127.77 1.33 5.66 15 2 N -0.63 -27.68 3.41 -753.53 -2.57 -30.26 15 3 C 0.12 4.08 10.56 127.77 1.35 5.43 15 4 C 0.32 17.43 7.54 132.99 1.00 18.43 15 5 C -0.42 -24.96 8.82 22.87 0.20 -24.76 15 6 C 0.24 14.02 6.75 39.09 0.26 14.28 15 7 C -0.48 -25.96 9.01 23.21 0.21 -25.75 15 8 H 0.09 4.29 7.20 -2.91 -0.02 4.26 15 9 C 0.03 1.63 5.50 85.31 0.47 2.10 15 10 N -0.81 -42.97 10.29 21.86 0.23 -42.75 15 11 Si 1.01 37.52 29.56 68.60 2.03 39.55 15 12 H -0.26 -9.45 7.11 99.48 0.71 -8.75 15 13 H -0.27 -9.50 7.11 99.48 0.71 -8.79 15 14 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 15 N -0.45 -24.38 4.09 -360.81 -1.48 -25.86 15 16 C 0.13 5.37 11.27 127.77 1.44 6.81 15 17 N -0.45 -25.10 11.93 -55.13 -0.66 -25.76 15 18 H 0.04 1.38 8.14 -2.39 -0.02 1.36 15 19 H 0.05 1.84 6.99 -2.39 -0.02 1.83 15 20 H 0.09 2.47 8.07 -2.39 -0.02 2.45 15 21 H 0.04 1.22 8.14 -2.39 -0.02 1.20 15 22 H 0.04 1.68 7.73 -2.39 -0.02 1.66 15 23 H 0.09 2.33 8.07 -2.38 -0.02 2.31 15 24 H 0.15 8.80 5.05 -2.91 -0.01 8.79 15 25 H 0.29 13.50 8.29 -92.71 -0.77 12.73 15 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 15 27 H 0.08 3.01 7.39 -2.39 -0.02 3.00 15 28 H 0.08 2.81 8.14 -2.39 -0.02 2.79 15 Total: -1.00 -69.38 241.81 4.96 -64.42 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 1.15 Total: 18.45 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 6.26 Total: 2.21 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -4.48 Total: -124.62 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -69.38 4.96 -64.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261015172.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.335 kcal (2) G-P(sol) polarization free energy of solvation -69.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds