Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46890 * 2 1 4 4 N 1.46503 * 109.47223 * 119.99432 * 2 1 3 5 5 N 1.40058 * 125.90561 * 299.97928 * 4 2 1 6 6 C 1.32922 * 108.11770 * 179.97438 * 5 4 2 7 7 C 1.41408 * 126.05911 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00072 * 186.22062 * 7 6 5 9 9 C 1.39807 * 120.00342 * 6.22935 * 7 6 5 10 10 N 1.30921 * 119.99631 * 6.43538 * 9 7 6 11 11 Si 1.86802 * 120.00471 * 186.43570 * 9 7 6 12 12 H 1.48501 * 109.47095 * 265.01551 * 11 9 7 13 13 H 1.48494 * 109.46967 * 25.01216 * 11 9 7 14 14 H 1.48503 * 109.47114 * 145.01439 * 11 9 7 15 15 C 1.41662 * 107.88310 * 0.26525 * 6 5 4 16 16 C 1.35528 * 107.80593 * 359.56037 * 15 6 5 17 17 N 1.39096 * 126.00063 * 180.11735 * 16 15 6 18 18 H 1.08998 * 109.47032 * 299.99788 * 1 2 3 19 19 H 1.08998 * 109.47125 * 59.99943 * 1 2 3 20 20 H 1.09001 * 109.46925 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47479 * 239.99602 * 2 1 3 22 22 H 1.08990 * 109.47223 * 59.99977 * 3 2 1 23 23 H 1.09001 * 109.46860 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.46475 * 299.99518 * 3 2 1 25 25 H 0.96996 * 119.99866 * 179.97438 * 10 9 7 26 26 H 1.07996 * 126.09677 * 179.71510 * 15 6 5 27 27 H 0.96998 * 119.99884 * 180.36315 * 17 16 15 28 28 H 0.97002 * 119.99559 * 0.37294 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 7 1.7577 -0.3210 2.5218 6 6 2.3705 -1.1887 3.3209 7 6 2.3584 -1.1703 4.7348 8 1 2.9726 -1.8645 5.2892 9 6 1.5512 -0.2537 5.4151 10 7 0.7135 0.5010 4.7496 11 14 1.6677 -0.1056 7.2736 12 1 0.6247 -0.9540 7.9042 13 1 3.0097 -0.5555 7.7228 14 1 1.4615 1.3102 7.6713 15 6 3.0434 -2.1312 2.5050 16 6 2.8050 -1.8046 1.2115 17 7 3.2843 -2.4824 0.0954 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.6767 1.9564 0.8899 23 1 3.1300 1.4426 0.0005 24 1 1.6766 1.9563 -0.8901 25 1 0.1532 1.1367 5.2216 26 1 3.6382 -2.9632 2.8520 27 1 3.0628 -2.1680 -0.7951 28 1 3.8400 -3.2695 0.2077 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261029359.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = 65.936245 kcal Electronic energy + Delta-G solvation = -12323.501689 eV Core-core repulsion = 10182.782639 eV Total energy + Delta-G solvation = -2140.719050 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.12534 -34.70905 -33.62624 -32.43324 -28.81281 -26.67379 -26.45402 -25.43678 -21.24245 -19.28829 -18.77882 -17.06968 -15.46432 -15.37847 -14.49863 -13.89495 -13.73121 -13.13887 -12.54296 -12.21883 -12.05907 -11.62205 -11.07477 -11.06681 -10.80627 -10.74663 -10.60845 -10.19890 -9.85689 -9.71254 -8.77740 -8.14013 -7.26418 -6.24514 -6.18678 -4.08792 3.22520 3.31177 3.36276 3.77719 3.90609 4.28650 4.60381 4.71091 5.27430 5.61791 5.62443 5.90064 6.01780 6.12941 6.23535 6.37433 6.70274 6.80422 7.00310 7.13775 7.45146 7.55238 7.63870 8.12200 8.38322 8.73099 8.96339 9.19170 9.42705 10.19819 10.79055 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.044134 B = 0.011772 C = 0.009928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.275346 B = 2377.908855 C = 2819.724066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.177 3.823 3 C -0.154 4.154 4 N -0.432 5.432 5 N -0.323 5.323 6 C 0.230 3.770 7 C -0.448 4.448 8 H 0.076 0.924 9 C 0.074 3.926 10 N -0.779 5.779 11 Si 0.902 3.098 12 H -0.276 1.276 13 H -0.266 1.266 14 H -0.282 1.282 15 C -0.373 4.373 16 C 0.321 3.679 17 N -0.878 5.878 18 H 0.075 0.925 19 H 0.053 0.947 20 H 0.050 0.950 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.267 0.733 26 H 0.111 0.889 27 H 0.383 0.617 28 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -1.026 -8.061 8.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.073 3.927 3 C -0.212 4.212 4 N -0.220 5.220 5 N -0.151 5.151 6 C 0.074 3.926 7 C -0.487 4.487 8 H 0.094 0.906 9 C -0.144 4.144 10 N -0.408 5.408 11 Si 0.728 3.272 12 H -0.202 1.202 13 H -0.190 1.190 14 H -0.207 1.207 15 C -0.407 4.407 16 C 0.101 3.899 17 N -0.428 5.428 18 H 0.094 0.906 19 H 0.072 0.928 20 H 0.069 0.931 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.129 0.871 27 H 0.209 0.791 28 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.390 0.277 -8.186 8.200 hybrid contribution 0.707 -0.924 0.482 1.260 sum 1.097 -0.647 -7.704 7.808 Atomic orbital electron populations 1.22061 0.94985 1.01881 1.02264 1.20509 0.94416 0.92890 0.84927 1.22062 1.00843 0.96045 1.02229 1.49157 1.43763 1.21934 1.07161 1.78903 1.31385 1.24020 0.80806 1.19106 0.90461 0.89349 0.93651 1.18558 1.24281 1.17428 0.88475 0.90585 1.25752 0.94232 0.94938 0.99478 1.69967 1.16944 1.17603 1.36270 0.86421 0.79168 0.77690 0.83950 1.20155 1.18979 1.20708 1.20519 1.20554 1.09691 0.89970 1.18118 0.94463 0.89143 0.88209 1.41367 1.62246 1.34685 1.04482 0.90574 0.92788 0.93121 0.91684 0.90752 0.93126 0.92710 0.92277 0.87053 0.79085 0.76991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.45 37.16 0.35 -2.37 15 2 C 0.18 3.30 3.69 -67.92 -0.25 3.05 15 3 C -0.15 -2.68 9.45 37.16 0.35 -2.33 15 4 N -0.43 -10.29 3.32 -53.86 -0.18 -10.47 15 5 N -0.32 -9.30 10.74 32.24 0.35 -8.96 15 6 C 0.23 6.77 6.72 -84.88 -0.57 6.20 15 7 C -0.45 -13.14 9.39 -37.79 -0.35 -13.49 15 8 H 0.08 2.11 7.85 -52.48 -0.41 1.70 15 9 C 0.07 2.08 5.49 -17.35 -0.10 1.99 15 10 N -0.78 -22.75 12.00 55.54 0.67 -22.08 15 11 Si 0.90 20.58 29.56 -169.99 -5.03 15.55 15 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 13 H -0.27 -5.94 7.11 56.52 0.40 -5.53 15 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 15 C -0.37 -9.67 10.78 -39.24 -0.42 -10.09 15 16 C 0.32 7.34 7.96 -152.71 -1.21 6.13 15 17 N -0.88 -14.54 9.10 31.18 0.28 -14.26 15 18 H 0.08 1.58 8.14 -51.93 -0.42 1.16 15 19 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.07 1.02 6.80 -51.93 -0.35 0.66 15 22 H 0.07 1.51 8.14 -51.93 -0.42 1.09 15 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.27 7.16 8.30 -40.82 -0.34 6.83 15 26 H 0.11 2.67 8.06 -52.49 -0.42 2.25 15 27 H 0.38 5.32 7.64 -40.82 -0.31 5.01 15 28 H 0.40 5.67 8.95 -40.82 -0.37 5.31 15 LS Contribution 245.43 15.07 3.70 3.70 Total: -1.00 -33.09 245.43 -5.95 -39.05 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -3.54 Total: 8.40 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.21 Total: -10.93 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 1.12 Total: -55.77 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -33.09 -5.95 -39.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261029359.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.983 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds