Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46890 * 2 1 4 4 N 1.46503 * 109.47223 * 119.99432 * 2 1 3 5 5 N 1.40058 * 125.90561 * 299.97928 * 4 2 1 6 6 C 1.32922 * 108.11770 * 179.97438 * 5 4 2 7 7 C 1.41408 * 126.05911 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00072 * 186.22062 * 7 6 5 9 9 C 1.39807 * 120.00342 * 6.22935 * 7 6 5 10 10 N 1.30921 * 119.99631 * 6.43538 * 9 7 6 11 11 Si 1.86802 * 120.00471 * 186.43570 * 9 7 6 12 12 H 1.48501 * 109.47095 * 265.01551 * 11 9 7 13 13 H 1.48494 * 109.46967 * 25.01216 * 11 9 7 14 14 H 1.48503 * 109.47114 * 145.01439 * 11 9 7 15 15 C 1.41662 * 107.88310 * 0.26525 * 6 5 4 16 16 C 1.35528 * 107.80593 * 359.56037 * 15 6 5 17 17 N 1.39096 * 126.00063 * 180.11735 * 16 15 6 18 18 H 1.08998 * 109.47032 * 299.99788 * 1 2 3 19 19 H 1.08998 * 109.47125 * 59.99943 * 1 2 3 20 20 H 1.09001 * 109.46925 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47479 * 239.99602 * 2 1 3 22 22 H 1.08990 * 109.47223 * 59.99977 * 3 2 1 23 23 H 1.09001 * 109.46860 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.46475 * 299.99518 * 3 2 1 25 25 H 0.96996 * 119.99866 * 179.97438 * 10 9 7 26 26 H 1.07996 * 126.09677 * 179.71510 * 15 6 5 27 27 H 0.96998 * 119.99884 * 180.36315 * 17 16 15 28 28 H 0.97002 * 119.99559 * 0.37294 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 7 1.7577 -0.3210 2.5218 6 6 2.3705 -1.1887 3.3209 7 6 2.3584 -1.1703 4.7348 8 1 2.9726 -1.8645 5.2892 9 6 1.5512 -0.2537 5.4151 10 7 0.7135 0.5010 4.7496 11 14 1.6677 -0.1056 7.2736 12 1 0.6247 -0.9540 7.9042 13 1 3.0097 -0.5555 7.7228 14 1 1.4615 1.3102 7.6713 15 6 3.0434 -2.1312 2.5050 16 6 2.8050 -1.8046 1.2115 17 7 3.2843 -2.4824 0.0954 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.6767 1.9564 0.8899 23 1 3.1300 1.4426 0.0005 24 1 1.6766 1.9563 -0.8901 25 1 0.1532 1.1367 5.2216 26 1 3.6382 -2.9632 2.8520 27 1 3.0628 -2.1680 -0.7951 28 1 3.8400 -3.2695 0.2077 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261029359.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = 42.487607 kcal Electronic energy + Delta-G solvation = -12324.518499 eV Core-core repulsion = 10182.782639 eV Total energy + Delta-G solvation = -2141.735860 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.99750 -36.39962 -35.34496 -34.34127 -30.72033 -28.33886 -28.09495 -27.47000 -23.00595 -21.17096 -20.54096 -18.86044 -17.43014 -16.92291 -16.36783 -15.44878 -15.43223 -14.90030 -14.41370 -13.95705 -13.68355 -13.03056 -12.87821 -12.78837 -12.63342 -12.39623 -12.21479 -11.93975 -11.76429 -11.54126 -10.70884 -10.16646 -9.22591 -8.27330 -8.07618 -6.25770 1.42445 1.44494 1.59667 1.91598 2.22722 2.37453 2.53387 3.24393 3.73369 3.82039 4.16981 4.20096 4.69205 4.72567 4.81035 4.89894 5.01535 5.22948 5.34026 5.42175 5.47764 5.59538 5.91234 6.23960 6.46699 6.96865 7.19911 7.23876 7.35908 8.16593 8.72913 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.044134 B = 0.011772 C = 0.009928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.275346 B = 2377.908855 C = 2819.724066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.160 3.840 3 C -0.145 4.145 4 N -0.434 5.434 5 N -0.360 5.360 6 C 0.193 3.807 7 C -0.488 4.488 8 H 0.076 0.924 9 C 0.025 3.975 10 N -0.819 5.819 11 Si 0.985 3.015 12 H -0.266 1.266 13 H -0.258 1.258 14 H -0.274 1.274 15 C -0.417 4.417 16 C 0.343 3.657 17 N -0.849 5.849 18 H 0.034 0.966 19 H 0.100 0.900 20 H 0.043 0.957 21 H 0.108 0.892 22 H 0.034 0.966 23 H 0.045 0.955 24 H 0.100 0.900 25 H 0.271 0.729 26 H 0.118 0.882 27 H 0.402 0.598 28 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -1.165 -9.533 9.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.058 3.942 3 C -0.203 4.203 4 N -0.224 5.224 5 N -0.189 5.189 6 C 0.037 3.963 7 C -0.527 4.527 8 H 0.095 0.905 9 C -0.190 4.190 10 N -0.448 5.448 11 Si 0.806 3.194 12 H -0.191 1.191 13 H -0.182 1.182 14 H -0.199 1.199 15 C -0.452 4.452 16 C 0.118 3.882 17 N -0.402 5.402 18 H 0.054 0.946 19 H 0.119 0.881 20 H 0.062 0.938 21 H 0.126 0.874 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.231 0.769 28 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.664 0.121 -9.709 9.733 hybrid contribution 0.629 -0.898 0.722 1.313 sum 1.293 -0.777 -8.987 9.113 Atomic orbital electron populations 1.21988 0.94321 1.01495 1.02519 1.21093 0.95120 0.93702 0.84287 1.21991 1.00460 0.95325 1.02538 1.49415 1.43466 1.22309 1.07179 1.78739 1.32075 1.24934 0.83132 1.19558 0.91583 0.90696 0.94457 1.18945 1.25563 1.18777 0.89402 0.90549 1.26718 0.93202 0.93935 1.05118 1.70099 1.17754 1.18307 1.38625 0.85169 0.79529 0.78003 0.76680 1.19062 1.18222 1.19852 1.20644 1.22675 1.10626 0.91205 1.18131 0.92645 0.88345 0.89086 1.41225 1.61156 1.34261 1.03552 0.94635 0.88117 0.93805 0.87372 0.94660 0.93576 0.88094 0.91887 0.86356 0.76860 0.75191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 9.45 71.98 0.68 -4.21 15 2 C 0.16 5.61 3.69 44.99 0.17 5.77 15 3 C -0.15 -4.80 9.45 71.99 0.68 -4.12 15 4 N -0.43 -20.53 3.32 -324.33 -1.08 -21.61 15 5 N -0.36 -21.40 10.74 -51.91 -0.56 -21.95 15 6 C 0.19 11.77 6.72 40.60 0.27 12.05 15 7 C -0.49 -29.75 9.39 23.43 0.22 -29.53 15 8 H 0.08 4.42 7.85 -2.91 -0.02 4.40 15 9 C 0.02 1.43 5.49 85.21 0.47 1.89 15 10 N -0.82 -49.48 12.00 21.80 0.26 -49.21 15 11 Si 0.98 43.19 29.56 68.60 2.03 45.21 15 12 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 13 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 14 H -0.27 -11.51 7.11 99.48 0.71 -10.81 15 15 C -0.42 -22.02 10.78 22.49 0.24 -21.77 15 16 C 0.34 15.29 7.96 130.96 1.04 16.33 15 17 N -0.85 -25.43 9.10 -55.28 -0.50 -25.93 15 18 H 0.03 1.47 8.14 -2.39 -0.02 1.45 15 19 H 0.10 2.42 8.14 -2.39 -0.02 2.40 15 20 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.11 2.87 6.80 -2.39 -0.02 2.85 15 22 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15 23 H 0.05 1.54 8.14 -2.39 -0.02 1.52 15 24 H 0.10 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.27 15.02 8.30 -92.71 -0.77 14.25 15 26 H 0.12 5.80 8.06 -2.91 -0.02 5.78 15 27 H 0.40 9.36 7.64 -92.71 -0.71 8.65 15 28 H 0.42 10.42 8.95 -92.71 -0.83 9.59 15 Total: -1.00 -75.92 245.43 3.56 -72.36 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.37 Total: 24.74 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 3.77 Total: -23.60 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -1.87 Total: -118.71 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -75.92 3.56 -72.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261029359.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.846 kcal (2) G-P(sol) polarization free energy of solvation -75.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds