Wall clock time and date at job start Mon Mar 30 2020 02:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47396 * 179.72503 * 3 2 1 5 5 H 1.48502 * 109.47435 * 299.72762 * 3 2 1 6 6 H 1.48510 * 109.46944 * 59.72475 * 3 2 1 7 7 C 1.37881 * 119.99939 * 179.72913 * 2 1 3 8 8 H 1.07997 * 120.00175 * 180.27658 * 7 2 1 9 9 C 1.50698 * 119.99804 * 0.27118 * 7 2 1 10 10 N 1.46904 * 109.47004 * 175.14494 * 9 7 2 11 11 C 1.46894 * 110.99857 * 287.94474 * 10 9 7 12 12 C 1.53008 * 117.49658 * 242.20104 * 11 10 9 13 13 C 1.53004 * 117.49750 * 173.58038 * 11 10 9 14 14 C 1.46902 * 111.00023 * 163.98803 * 10 9 7 15 15 C 1.53779 * 113.61251 * 36.45066 * 14 10 9 16 16 C 1.53778 * 87.08447 * 220.01763 * 15 14 10 17 17 C 1.53785 * 113.61310 * 298.95661 * 14 10 9 18 18 H 0.96993 * 119.99763 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.47299 * 295.14641 * 9 7 2 20 20 H 1.08999 * 109.47015 * 55.14615 * 9 7 2 21 21 H 1.09003 * 115.55390 * 27.90875 * 11 10 9 22 22 H 1.08998 * 117.49746 * 0.02562 * 12 11 10 23 23 H 1.09002 * 117.49801 * 145.02706 * 12 11 10 24 24 H 1.09004 * 117.49596 * 214.97595 * 13 11 10 25 25 H 1.08997 * 117.49828 * 359.97438 * 13 11 10 26 26 H 1.08993 * 112.84836 * 167.75910 * 14 10 9 27 27 H 1.08996 * 113.61734 * 334.57325 * 15 14 10 28 28 H 1.09001 * 113.61301 * 105.46941 * 15 14 10 29 29 H 1.09001 * 113.61902 * 270.88963 * 16 15 14 30 30 H 1.08997 * 113.61747 * 139.97737 * 16 15 14 31 31 H 1.09003 * 113.60830 * 254.52519 * 17 14 10 32 32 H 1.08998 * 113.61677 * 25.34929 * 17 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0067 5 1 1.8955 2.3936 -1.2158 6 1 1.8854 2.3993 1.2092 7 6 2.0046 -1.1941 0.0056 8 1 3.0845 -1.1941 0.0102 9 6 1.2510 -2.4991 0.0056 10 7 2.2018 -3.6135 -0.1051 11 6 2.7729 -3.6859 -1.4565 12 6 2.4992 -4.9511 -2.2723 13 6 3.8941 -4.6990 -1.6962 14 6 1.5679 -4.8853 0.2675 15 6 0.0977 -4.9923 -0.1705 16 6 -0.1746 -5.6687 1.1835 17 6 1.0564 -4.9172 1.7174 18 1 -0.4849 -0.8400 -0.0004 19 1 0.6874 -2.5933 0.9338 20 1 0.5642 -2.5221 -0.8404 21 1 2.8253 -2.7402 -1.9961 22 1 1.8950 -5.7295 -1.8063 23 1 2.3714 -4.8379 -3.3488 24 1 4.6838 -4.4200 -2.3939 25 1 4.2082 -5.3115 -0.8511 26 1 2.1696 -5.7531 -0.0025 27 1 -0.3956 -4.0270 -0.2834 28 1 -0.0563 -5.6501 -1.0259 29 1 -0.0504 -6.7514 1.1636 30 1 -1.1108 -5.3574 1.6467 31 1 1.6765 -5.5144 2.3860 32 1 0.8265 -3.9312 2.1211 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042318.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:18 Heat of formation + Delta-G solvation = 50.401121 kcal Electronic energy + Delta-G solvation = -12783.734196 eV Core-core repulsion = 10745.881836 eV Total energy + Delta-G solvation = -2037.852361 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.54116 -36.19857 -33.60092 -31.31913 -26.39284 -25.26560 -23.87992 -22.58806 -21.80660 -20.10441 -18.34208 -16.64976 -15.79983 -15.65061 -14.37171 -13.75616 -13.71104 -13.12193 -12.49862 -12.28194 -11.94973 -11.40904 -11.27773 -10.95706 -10.82602 -10.70616 -10.40448 -10.25543 -10.09567 -9.96328 -9.75337 -9.53113 -8.62135 -8.33616 -7.12912 -6.34468 -4.03361 3.45930 3.49441 3.64106 4.34368 4.54013 4.71908 5.08646 5.12512 5.23254 5.35716 5.40201 5.48604 5.53319 5.72214 5.88830 6.00251 6.04303 6.20341 6.23796 6.27036 6.38723 6.51214 6.53730 6.66834 6.81081 7.01599 7.14141 7.88078 8.05547 8.34174 8.64370 8.90099 9.67180 11.04090 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035442 B = 0.012050 C = 0.009934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.840705 B = 2322.999971 C = 2817.891100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 1.076 2.924 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.587 4.587 8 H 0.058 0.942 9 C 0.183 3.817 10 N -0.491 5.491 11 C 0.056 3.944 12 C -0.231 4.231 13 C -0.185 4.185 14 C 0.060 3.940 15 C -0.176 4.176 16 C -0.142 4.142 17 C -0.132 4.132 18 H 0.266 0.734 19 H 0.024 0.976 20 H -0.011 1.011 21 H 0.121 0.879 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 -9.570 -1.063 9.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.190 4.190 3 Si 0.905 3.095 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.626 4.626 8 H 0.076 0.924 9 C 0.058 3.942 10 N -0.211 5.211 11 C -0.055 4.055 12 C -0.270 4.270 13 C -0.223 4.223 14 C -0.049 4.049 15 C -0.215 4.215 16 C -0.180 4.180 17 C -0.170 4.170 18 H 0.077 0.923 19 H 0.042 0.958 20 H 0.007 0.993 21 H 0.138 0.862 22 H 0.112 0.888 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.735 -7.801 -0.704 8.297 hybrid contribution -0.466 -1.947 -0.604 2.091 sum 2.268 -9.748 -1.308 10.094 Atomic orbital electron populations 1.70744 1.06893 1.30375 1.47361 1.25835 0.96480 1.02664 0.94012 0.83444 0.74545 0.74692 0.76859 1.21410 1.21494 1.21386 1.22085 0.95056 0.90917 1.54514 0.92368 1.19900 0.90630 0.88460 0.95181 1.61786 1.35293 1.02717 1.21265 1.22553 0.99283 0.93342 0.90273 1.23595 1.00101 1.03523 0.99796 1.23002 0.91739 1.04918 1.02671 1.23194 0.92038 0.93678 0.95987 1.23708 0.99633 1.01607 0.96580 1.22711 0.98646 0.98913 0.97716 1.23091 0.96334 1.01114 0.96469 0.92334 0.95774 0.99349 0.86156 0.88816 0.89782 0.89325 0.89374 0.89164 0.88999 0.92480 0.90901 0.91763 0.92074 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.90 13.65 55.43 0.76 -27.14 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.29 16 3 Si 1.08 25.61 29.90 -169.99 -5.08 20.52 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.59 -16.71 8.54 -34.44 -0.29 -17.01 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.18 4.69 2.58 -4.97 -0.01 4.68 16 10 N -0.49 -10.77 4.78 -219.17 -1.05 -11.82 16 11 C 0.06 1.12 5.80 -67.71 -0.39 0.72 16 12 C -0.23 -3.82 9.38 -26.72 -0.25 -4.07 16 13 C -0.19 -3.05 9.99 -26.73 -0.27 -3.32 16 14 C 0.06 1.10 2.79 -66.90 -0.19 0.92 16 15 C -0.18 -3.06 6.76 -25.92 -0.18 -3.23 16 16 C -0.14 -2.14 8.08 -25.92 -0.21 -2.35 16 17 C -0.13 -2.28 7.53 -25.91 -0.20 -2.47 16 18 H 0.27 8.06 7.19 -40.82 -0.29 7.77 16 19 H 0.02 0.65 5.79 -51.93 -0.30 0.35 16 20 H -0.01 -0.30 6.69 -51.93 -0.35 -0.65 16 21 H 0.12 2.66 7.55 -51.93 -0.39 2.27 16 22 H 0.09 1.49 5.03 -51.93 -0.26 1.23 16 23 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 24 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.09 1.42 7.82 -51.93 -0.41 1.01 16 26 H 0.09 1.52 6.11 -51.93 -0.32 1.20 16 27 H 0.09 1.85 5.78 -51.93 -0.30 1.55 16 28 H 0.06 0.90 7.47 -51.93 -0.39 0.52 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.79 6.33 -51.93 -0.33 1.46 16 LS Contribution 250.84 15.07 3.78 3.78 Total: -1.00 -29.66 250.84 -8.33 -37.99 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.65 Total: 2.51 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -2.08 Total: -25.84 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: -0.29 Total: -38.96 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.66 -8.33 -37.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042318.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.392 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds