Wall clock time and date at job start Mon Mar 30 2020 02:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47396 * 179.72503 * 3 2 1 5 5 H 1.48502 * 109.47435 * 299.72762 * 3 2 1 6 6 H 1.48510 * 109.46944 * 59.72475 * 3 2 1 7 7 C 1.37881 * 119.99939 * 179.72913 * 2 1 3 8 8 H 1.07997 * 120.00175 * 180.27658 * 7 2 1 9 9 C 1.50698 * 119.99804 * 0.27118 * 7 2 1 10 10 N 1.46904 * 109.47004 * 175.14494 * 9 7 2 11 11 C 1.46894 * 110.99857 * 287.94474 * 10 9 7 12 12 C 1.53008 * 117.49658 * 242.20104 * 11 10 9 13 13 C 1.53004 * 117.49750 * 173.58038 * 11 10 9 14 14 C 1.46902 * 111.00023 * 163.98803 * 10 9 7 15 15 C 1.53779 * 113.61251 * 36.45066 * 14 10 9 16 16 C 1.53778 * 87.08447 * 220.01763 * 15 14 10 17 17 C 1.53785 * 113.61310 * 298.95661 * 14 10 9 18 18 H 0.96993 * 119.99763 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.47299 * 295.14641 * 9 7 2 20 20 H 1.08999 * 109.47015 * 55.14615 * 9 7 2 21 21 H 1.09003 * 115.55390 * 27.90875 * 11 10 9 22 22 H 1.08998 * 117.49746 * 0.02562 * 12 11 10 23 23 H 1.09002 * 117.49801 * 145.02706 * 12 11 10 24 24 H 1.09004 * 117.49596 * 214.97595 * 13 11 10 25 25 H 1.08997 * 117.49828 * 359.97438 * 13 11 10 26 26 H 1.08993 * 112.84836 * 167.75910 * 14 10 9 27 27 H 1.08996 * 113.61734 * 334.57325 * 15 14 10 28 28 H 1.09001 * 113.61301 * 105.46941 * 15 14 10 29 29 H 1.09001 * 113.61902 * 270.88963 * 16 15 14 30 30 H 1.08997 * 113.61747 * 139.97737 * 16 15 14 31 31 H 1.09003 * 113.60830 * 254.52519 * 17 14 10 32 32 H 1.08998 * 113.61677 * 25.34929 * 17 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0067 5 1 1.8955 2.3936 -1.2158 6 1 1.8854 2.3993 1.2092 7 6 2.0046 -1.1941 0.0056 8 1 3.0845 -1.1941 0.0102 9 6 1.2510 -2.4991 0.0056 10 7 2.2018 -3.6135 -0.1051 11 6 2.7729 -3.6859 -1.4565 12 6 2.4992 -4.9511 -2.2723 13 6 3.8941 -4.6990 -1.6962 14 6 1.5679 -4.8853 0.2675 15 6 0.0977 -4.9923 -0.1705 16 6 -0.1746 -5.6687 1.1835 17 6 1.0564 -4.9172 1.7174 18 1 -0.4849 -0.8400 -0.0004 19 1 0.6874 -2.5933 0.9338 20 1 0.5642 -2.5221 -0.8404 21 1 2.8253 -2.7402 -1.9961 22 1 1.8950 -5.7295 -1.8063 23 1 2.3714 -4.8379 -3.3488 24 1 4.6838 -4.4200 -2.3939 25 1 4.2082 -5.3115 -0.8511 26 1 2.1696 -5.7531 -0.0025 27 1 -0.3956 -4.0270 -0.2834 28 1 -0.0563 -5.6501 -1.0259 29 1 -0.0504 -6.7514 1.1636 30 1 -1.1108 -5.3574 1.6467 31 1 1.6765 -5.5144 2.3860 32 1 0.8265 -3.9312 2.1211 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042318.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:18 Heat of formation + Delta-G solvation = 31.685668 kcal Electronic energy + Delta-G solvation = -12784.545759 eV Core-core repulsion = 10745.881836 eV Total energy + Delta-G solvation = -2038.663923 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.03788 -37.60436 -35.67080 -33.13836 -28.35747 -26.66764 -25.45968 -24.57900 -23.12623 -21.56296 -20.04174 -18.52323 -17.42545 -17.26562 -15.72599 -15.66164 -15.39495 -14.73821 -14.23743 -13.96215 -13.53640 -13.02667 -12.96159 -12.75698 -12.51586 -12.22032 -11.93982 -11.82517 -11.79274 -11.36242 -11.17153 -11.02953 -10.73546 -10.54618 -8.85904 -8.62612 -6.37627 1.51095 1.60474 1.78218 2.54039 2.88779 3.13368 3.20944 3.73079 3.77489 3.86083 3.96832 4.02435 4.16396 4.30524 4.55472 4.68510 4.74058 4.77413 4.86796 4.91730 4.95718 5.00717 5.05019 5.10207 5.24329 5.25888 5.50220 5.87194 6.04883 6.44676 6.48367 6.69327 7.42283 8.70696 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035442 B = 0.012050 C = 0.009934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.840705 B = 2322.999971 C = 2817.891100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.037 4.037 3 Si 1.123 2.877 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.598 4.598 8 H 0.048 0.952 9 C 0.204 3.796 10 N -0.503 5.503 11 C 0.009 3.991 12 C -0.208 4.208 13 C -0.158 4.158 14 C 0.055 3.945 15 C -0.178 4.178 16 C -0.122 4.122 17 C -0.137 4.137 18 H 0.253 0.747 19 H 0.006 0.994 20 H -0.038 1.038 21 H 0.087 0.913 22 H 0.105 0.895 23 H 0.098 0.902 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 -11.220 -1.309 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.234 4.234 3 Si 0.945 3.055 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.637 4.637 8 H 0.066 0.934 9 C 0.078 3.922 10 N -0.223 5.223 11 C -0.101 4.101 12 C -0.247 4.247 13 C -0.196 4.196 14 C -0.054 4.054 15 C -0.217 4.217 16 C -0.160 4.160 17 C -0.175 4.175 18 H 0.062 0.938 19 H 0.023 0.977 20 H -0.021 1.021 21 H 0.105 0.895 22 H 0.123 0.877 23 H 0.116 0.884 24 H 0.126 0.874 25 H 0.117 0.883 26 H 0.134 0.866 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.899 -9.486 -0.956 10.300 hybrid contribution -0.812 -1.498 -0.552 1.791 sum 3.088 -10.984 -1.507 11.509 Atomic orbital electron populations 1.70871 1.07838 1.29616 1.49375 1.27362 0.96538 1.06556 0.92957 0.82851 0.74146 0.70957 0.77557 1.19744 1.20358 1.20347 1.22396 0.94733 0.92594 1.53957 0.93368 1.19469 0.90380 0.89409 0.92958 1.61732 1.34454 1.03257 1.22898 1.22460 1.03615 0.93839 0.90189 1.23628 1.00171 1.00720 1.00153 1.23085 0.91727 1.01932 1.02878 1.23439 0.92580 0.92699 0.96669 1.23594 0.98801 1.00419 0.98923 1.22697 0.97642 1.00479 0.95153 1.23057 0.98073 1.00057 0.96352 0.93752 0.97658 1.02074 0.89515 0.87681 0.88408 0.87413 0.88347 0.86563 0.92926 0.90542 0.87274 0.91587 0.89790 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.07 13.65 21.45 0.29 -58.78 16 2 C -0.04 -2.19 5.46 84.66 0.46 -1.73 16 3 Si 1.12 51.90 29.90 68.60 2.05 53.95 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.60 -35.33 8.54 25.60 0.22 -35.11 16 8 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 9 C 0.20 10.98 2.58 85.56 0.22 11.20 16 10 N -0.50 -22.36 4.78 -847.34 -4.05 -26.41 16 11 C 0.01 0.34 5.80 44.92 0.26 0.60 16 12 C -0.21 -6.35 9.38 30.60 0.29 -6.06 16 13 C -0.16 -4.78 9.99 30.60 0.31 -4.47 16 14 C 0.05 1.93 2.79 45.44 0.13 2.06 16 15 C -0.18 -6.06 6.76 31.12 0.21 -5.84 16 16 C -0.12 -3.42 8.08 31.12 0.25 -3.16 16 17 C -0.14 -4.61 7.53 31.12 0.23 -4.38 16 18 H 0.25 16.16 7.19 -92.71 -0.67 15.50 16 19 H 0.01 0.32 5.79 -2.39 -0.01 0.30 16 20 H -0.04 -2.23 6.69 -2.39 -0.02 -2.24 16 21 H 0.09 3.99 7.55 -2.39 -0.02 3.98 16 22 H 0.11 2.98 5.03 -2.39 -0.01 2.97 16 23 H 0.10 2.72 8.14 -2.39 -0.02 2.71 16 24 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 25 H 0.10 2.80 7.82 -2.39 -0.02 2.78 16 26 H 0.12 3.51 6.11 -2.39 -0.01 3.50 16 27 H 0.05 2.21 5.78 -2.39 -0.01 2.20 16 28 H 0.08 2.26 7.47 -2.39 -0.02 2.24 16 29 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.05 2.21 6.33 -2.39 -0.02 2.20 16 Total: -1.00 -66.24 250.84 2.07 -64.17 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.19 Total: 13.97 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 2.58 Total: -46.90 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -3.75 Total: -85.18 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.05 Total: 53.95 kcal Total: -66.24 2.07 -64.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042318.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.852 kcal (2) G-P(sol) polarization free energy of solvation -66.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds