Wall clock time and date at job start Mon Mar 30 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47068 * 2 1 4 4 N 1.40086 * 126.03847 * 275.21603 * 3 2 1 5 5 C 1.30840 * 108.20018 * 180.23198 * 4 3 2 6 6 C 1.39865 * 108.20536 * 359.78653 * 5 4 3 7 7 C 1.34944 * 126.03246 * 95.06887 * 3 2 1 8 8 C 1.50703 * 126.13005 * 0.02938 * 7 3 2 9 9 H 1.08991 * 109.47060 * 334.91157 * 8 7 3 10 10 N 1.46898 * 109.47161 * 214.90702 * 8 7 3 11 11 C 1.50699 * 109.46872 * 94.90809 * 8 7 3 12 12 H 1.08005 * 120.00138 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00230 * 180.02562 * 11 8 7 14 14 N 1.31512 * 120.00253 * 179.97438 * 13 11 8 15 15 Si 1.86799 * 119.99833 * 359.97438 * 13 11 8 16 16 H 1.48496 * 109.47287 * 270.00000 * 15 13 11 17 17 H 1.48507 * 109.47160 * 29.99953 * 15 13 11 18 18 H 1.48496 * 109.47173 * 149.99821 * 15 13 11 19 19 H 1.09000 * 109.46706 * 59.99574 * 1 2 3 20 20 H 1.08996 * 109.46688 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47014 * 300.00119 * 1 2 3 22 22 H 1.09001 * 109.47571 * 240.00510 * 2 1 3 23 23 H 1.08993 * 109.47534 * 120.00293 * 2 1 3 24 24 H 1.07998 * 125.89368 * 179.74402 * 5 4 3 25 25 H 1.07996 * 126.03991 * 180.02562 * 6 5 4 26 26 H 1.00903 * 111.00343 * 296.27592 * 10 8 7 27 27 H 1.00902 * 111.00102 * 60.23467 * 10 8 7 28 28 H 0.97004 * 119.99708 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1959 2.1927 -1.1281 5 6 2.6502 3.3531 -0.7294 6 6 2.7716 3.3197 0.6636 7 6 2.3738 2.0976 1.0870 8 6 2.3400 1.6199 2.5159 9 1 1.6039 0.8223 2.6150 10 7 1.9737 2.7367 3.3971 11 6 3.7000 1.0992 2.9038 12 1 4.5079 1.1125 2.1871 13 6 3.9127 0.6050 4.1732 14 7 5.0994 0.1502 4.5115 15 14 2.5153 0.5813 5.4126 16 1 2.5107 1.8540 6.1777 17 1 1.2224 0.4286 4.6980 18 1 2.7018 -0.5574 6.3472 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3632 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 2.8906 4.1917 -1.3661 25 1 3.1205 4.1269 1.2905 26 1 2.6728 3.4637 3.3691 27 1 1.0633 3.1012 3.1595 28 1 5.2489 -0.1979 5.4045 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261045982.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:25 Heat of formation + Delta-G solvation = 70.402603 kcal Electronic energy + Delta-G solvation = -12416.708465 eV Core-core repulsion = 10276.183090 eV Total energy + Delta-G solvation = -2140.525375 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.58841 -34.95764 -33.97432 -31.91508 -29.32780 -28.46996 -26.40465 -23.45142 -22.26747 -20.26257 -18.70372 -16.99849 -16.25673 -14.91692 -14.58758 -14.42358 -13.92893 -13.67522 -12.92069 -12.85817 -12.37287 -12.09692 -11.86438 -11.44016 -10.98712 -10.76672 -10.62716 -10.12727 -9.92142 -9.44662 -8.65269 -8.55503 -7.97417 -7.71921 -6.11227 -4.24097 2.58978 3.12829 3.48888 3.49711 3.54307 3.66362 4.54565 5.00258 5.15332 5.29481 5.40507 5.51385 5.61970 5.78934 5.88155 5.93235 6.18818 6.24366 6.44733 6.50573 6.96953 7.28873 7.40412 7.69940 8.00147 8.17347 8.39332 8.57118 8.88553 9.49244 10.97750 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.039508 B = 0.013107 C = 0.011972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.551703 B = 2135.801529 C = 2338.182441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 N -0.368 5.368 4 N -0.325 5.325 5 C 0.040 3.960 6 C -0.296 4.296 7 C 0.110 3.890 8 C 0.240 3.760 9 H 0.050 0.950 10 N -0.831 5.831 11 C -0.522 4.522 12 H 0.073 0.927 13 C 0.084 3.916 14 N -0.893 5.893 15 Si 0.936 3.064 16 H -0.278 1.278 17 H -0.274 1.274 18 H -0.316 1.316 19 H 0.059 0.941 20 H 0.072 0.928 21 H 0.059 0.941 22 H 0.085 0.915 23 H 0.103 0.897 24 H 0.172 0.828 25 H 0.137 0.863 26 H 0.341 0.659 27 H 0.314 0.686 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 2.345 -5.687 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 N -0.150 5.150 4 N -0.146 5.146 5 C -0.145 4.145 6 C -0.326 4.326 7 C -0.020 4.020 8 C 0.129 3.871 9 H 0.068 0.932 10 N -0.361 5.361 11 C -0.561 4.561 12 H 0.091 0.909 13 C -0.121 4.121 14 N -0.530 5.530 15 Si 0.767 3.233 16 H -0.204 1.204 17 H -0.199 1.199 18 H -0.246 1.246 19 H 0.078 0.922 20 H 0.091 0.909 21 H 0.078 0.922 22 H 0.104 0.896 23 H 0.121 0.879 24 H 0.189 0.811 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.125 0.875 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.452 0.886 -5.979 10.391 hybrid contribution -0.226 1.134 0.420 1.230 sum -8.678 2.020 -5.559 10.502 Atomic orbital electron populations 1.22154 0.95086 1.02506 1.02676 1.21613 0.94498 0.78718 1.04618 1.48533 1.51081 1.11564 1.03837 1.77136 1.24871 1.03326 1.09249 1.23615 0.99766 0.95959 0.95191 1.21024 1.17457 0.99400 0.94695 1.22862 0.94573 0.91698 0.92900 1.18393 0.98742 0.90413 0.79555 0.93192 1.59428 1.05958 1.14271 1.56406 1.20664 0.93935 1.42132 0.99357 0.90924 1.25012 0.96093 0.92749 0.98226 1.69947 1.22339 1.40255 1.20421 0.85878 0.81850 0.75969 0.79559 1.20381 1.19941 1.24601 0.92181 0.90915 0.92156 0.89625 0.87862 0.81083 0.84546 0.84469 0.87497 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 15 2 C 0.13 2.09 6.86 -4.04 -0.03 2.06 15 3 N -0.37 -7.29 3.61 -57.14 -0.21 -7.50 15 4 N -0.32 -6.41 12.58 30.62 0.39 -6.03 15 5 C 0.04 0.73 12.03 -17.37 -0.21 0.52 15 6 C -0.30 -5.78 10.16 -40.01 -0.41 -6.19 15 7 C 0.11 2.31 5.88 -82.26 -0.48 1.83 15 8 C 0.24 5.41 2.17 -70.02 -0.15 5.26 15 9 H 0.05 1.14 6.44 -51.93 -0.33 0.81 15 10 N -0.83 -16.91 6.60 -6.65 -0.04 -16.95 15 11 C -0.52 -14.22 9.26 -34.44 -0.32 -14.54 15 12 H 0.07 2.23 7.98 -52.48 -0.42 1.81 15 13 C 0.08 2.37 5.47 -17.82 -0.10 2.27 15 14 N -0.89 -26.78 13.96 55.43 0.77 -26.00 15 15 Si 0.94 22.90 26.03 -169.99 -4.42 18.48 15 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 17 H -0.27 -6.45 6.54 56.52 0.37 -6.08 15 18 H -0.32 -7.84 7.11 56.52 0.40 -7.44 15 19 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 22 H 0.09 1.28 8.14 -51.93 -0.42 0.85 15 23 H 0.10 1.77 7.31 -51.93 -0.38 1.39 15 24 H 0.17 2.41 8.06 -52.49 -0.42 1.99 15 25 H 0.14 2.45 7.58 -52.49 -0.40 2.05 15 26 H 0.34 6.74 8.20 -39.29 -0.32 6.42 15 27 H 0.31 5.51 9.03 -39.29 -0.35 5.16 15 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 LS Contribution 241.05 15.07 3.63 3.63 Total: -1.00 -31.43 241.05 -4.69 -36.11 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -3.49 Total: 8.91 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.31 Total: -10.66 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.91 Total: -56.48 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.42 Total: 18.48 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.43 -4.69 -36.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045982.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.516 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds