Wall clock time and date at job start Mon Mar 30 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47068 * 2 1 4 4 N 1.40086 * 126.03847 * 275.21603 * 3 2 1 5 5 C 1.30840 * 108.20018 * 180.23198 * 4 3 2 6 6 C 1.39865 * 108.20536 * 359.78653 * 5 4 3 7 7 C 1.34944 * 126.03246 * 95.06887 * 3 2 1 8 8 C 1.50703 * 126.13005 * 0.02938 * 7 3 2 9 9 H 1.08991 * 109.47060 * 334.91157 * 8 7 3 10 10 N 1.46898 * 109.47161 * 214.90702 * 8 7 3 11 11 C 1.50699 * 109.46872 * 94.90809 * 8 7 3 12 12 H 1.08005 * 120.00138 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00230 * 180.02562 * 11 8 7 14 14 N 1.31512 * 120.00253 * 179.97438 * 13 11 8 15 15 Si 1.86799 * 119.99833 * 359.97438 * 13 11 8 16 16 H 1.48496 * 109.47287 * 270.00000 * 15 13 11 17 17 H 1.48507 * 109.47160 * 29.99953 * 15 13 11 18 18 H 1.48496 * 109.47173 * 149.99821 * 15 13 11 19 19 H 1.09000 * 109.46706 * 59.99574 * 1 2 3 20 20 H 1.08996 * 109.46688 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47014 * 300.00119 * 1 2 3 22 22 H 1.09001 * 109.47571 * 240.00510 * 2 1 3 23 23 H 1.08993 * 109.47534 * 120.00293 * 2 1 3 24 24 H 1.07998 * 125.89368 * 179.74402 * 5 4 3 25 25 H 1.07996 * 126.03991 * 180.02562 * 6 5 4 26 26 H 1.00903 * 111.00343 * 296.27592 * 10 8 7 27 27 H 1.00902 * 111.00102 * 60.23467 * 10 8 7 28 28 H 0.97004 * 119.99708 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1959 2.1927 -1.1281 5 6 2.6502 3.3531 -0.7294 6 6 2.7716 3.3197 0.6636 7 6 2.3738 2.0976 1.0870 8 6 2.3400 1.6199 2.5159 9 1 1.6039 0.8223 2.6150 10 7 1.9737 2.7367 3.3971 11 6 3.7000 1.0992 2.9038 12 1 4.5079 1.1125 2.1871 13 6 3.9127 0.6050 4.1732 14 7 5.0994 0.1502 4.5115 15 14 2.5153 0.5813 5.4126 16 1 2.5107 1.8540 6.1777 17 1 1.2224 0.4286 4.6980 18 1 2.7018 -0.5574 6.3472 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3632 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 2.8906 4.1917 -1.3661 25 1 3.1205 4.1269 1.2905 26 1 2.6728 3.4637 3.3691 27 1 1.0633 3.1012 3.1595 28 1 5.2489 -0.1979 5.4045 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261045982.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:25 Heat of formation + Delta-G solvation = 46.896481 kcal Electronic energy + Delta-G solvation = -12417.727766 eV Core-core repulsion = 10276.183090 eV Total energy + Delta-G solvation = -2141.544677 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.08783 -36.75200 -35.29349 -33.99825 -30.75516 -29.92716 -28.37655 -24.80911 -24.03482 -21.72158 -20.27623 -19.04337 -17.82974 -16.75064 -16.06679 -15.96341 -15.58799 -15.14403 -14.59879 -14.37699 -14.11231 -13.43645 -13.32140 -12.86485 -12.70103 -12.55308 -12.20950 -11.77250 -11.63983 -11.53683 -10.79108 -10.08372 -9.60875 -9.28994 -8.28194 -6.44725 1.05721 1.52684 1.59382 1.72043 1.73446 2.00895 2.50231 3.06135 3.69720 3.94729 4.08556 4.15066 4.20308 4.38422 4.50727 4.76882 4.78302 4.93530 4.98890 5.14621 5.29939 5.50253 5.87513 6.03902 6.22516 6.35204 6.68337 6.86268 6.93538 7.32168 8.84899 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.039508 B = 0.013107 C = 0.011972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.551703 B = 2135.801529 C = 2338.182441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.116 3.884 3 N -0.374 5.374 4 N -0.339 5.339 5 C 0.043 3.957 6 C -0.301 4.301 7 C 0.083 3.917 8 C 0.254 3.746 9 H 0.051 0.949 10 N -0.831 5.831 11 C -0.519 4.519 12 H 0.024 0.976 13 C 0.033 3.967 14 N -0.943 5.943 15 Si 1.001 2.999 16 H -0.274 1.274 17 H -0.256 1.256 18 H -0.321 1.321 19 H 0.059 0.941 20 H 0.102 0.898 21 H 0.051 0.949 22 H 0.097 0.903 23 H 0.090 0.910 24 H 0.211 0.789 25 H 0.148 0.852 26 H 0.346 0.654 27 H 0.336 0.664 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 3.052 -5.999 12.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.005 4.005 3 N -0.157 5.157 4 N -0.160 5.160 5 C -0.142 4.142 6 C -0.330 4.330 7 C -0.048 4.048 8 C 0.141 3.859 9 H 0.068 0.932 10 N -0.362 5.362 11 C -0.558 4.558 12 H 0.042 0.958 13 C -0.167 4.167 14 N -0.582 5.582 15 Si 0.830 3.170 16 H -0.200 1.200 17 H -0.180 1.180 18 H -0.251 1.251 19 H 0.078 0.922 20 H 0.121 0.879 21 H 0.070 0.930 22 H 0.116 0.884 23 H 0.108 0.892 24 H 0.228 0.772 25 H 0.166 0.834 26 H 0.160 0.840 27 H 0.149 0.851 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.382 1.599 -6.313 12.256 hybrid contribution 0.433 0.939 0.408 1.112 sum -9.949 2.538 -5.905 11.844 Atomic orbital electron populations 1.22076 0.92579 1.04358 1.02175 1.21879 0.96582 0.77470 1.04568 1.48836 1.50976 1.12419 1.03467 1.77108 1.25399 1.04046 1.09469 1.24233 0.98424 0.96451 0.95078 1.21319 1.16746 0.99238 0.95745 1.22727 0.96560 0.92810 0.92654 1.17980 0.95830 0.91091 0.80953 0.93151 1.59161 1.07303 1.14048 1.55649 1.20770 0.94949 1.41865 0.98182 0.95811 1.25848 0.98232 0.92448 1.00209 1.70075 1.24679 1.42277 1.21126 0.84845 0.79443 0.75728 0.77033 1.19969 1.18011 1.25143 0.92180 0.87907 0.92984 0.88428 0.89192 0.77223 0.83393 0.84018 0.85112 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 10.24 71.98 0.74 -3.11 15 2 C 0.12 3.68 6.86 86.38 0.59 4.27 15 3 N -0.37 -14.43 3.61 -334.69 -1.21 -15.64 15 4 N -0.34 -12.79 12.58 -57.03 -0.72 -13.51 15 5 C 0.04 1.46 12.03 85.23 1.02 2.49 15 6 C -0.30 -11.24 10.16 21.99 0.22 -11.02 15 7 C 0.08 3.42 5.88 41.41 0.24 3.66 15 8 C 0.25 11.16 2.17 43.42 0.09 11.26 15 9 H 0.05 2.23 6.44 -2.39 -0.02 2.21 15 10 N -0.83 -31.95 6.60 -174.96 -1.16 -33.11 15 11 C -0.52 -28.65 9.26 25.60 0.24 -28.42 15 12 H 0.02 1.51 7.98 -2.91 -0.02 1.48 15 13 C 0.03 1.85 5.47 84.66 0.46 2.31 15 14 N -0.94 -57.82 13.96 21.45 0.30 -57.52 15 15 Si 1.00 46.68 26.03 68.60 1.79 48.46 15 16 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 17 H -0.26 -11.06 6.54 99.48 0.65 -10.40 15 18 H -0.32 -15.17 7.11 99.48 0.71 -14.46 15 19 H 0.06 1.50 8.14 -2.39 -0.02 1.48 15 20 H 0.10 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 22 H 0.10 2.81 8.14 -2.39 -0.02 2.79 15 23 H 0.09 3.07 7.31 -2.39 -0.02 3.05 15 24 H 0.21 5.17 8.06 -2.91 -0.02 5.15 15 25 H 0.15 5.04 7.58 -2.91 -0.02 5.02 15 26 H 0.35 13.01 8.20 -89.69 -0.74 12.28 15 27 H 0.34 10.78 9.03 -89.69 -0.81 9.97 15 28 H 0.27 15.40 8.31 -92.71 -0.77 14.63 15 Total: -1.00 -67.45 241.05 2.19 -65.26 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.43 Total: 24.61 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 3.61 Total: -18.55 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -2.78 Total: -119.78 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.79 Total: 48.46 kcal Total: -67.45 2.19 -65.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045982.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.160 kcal (2) G-P(sol) polarization free energy of solvation -67.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds