Wall clock time and date at job start Mon Mar 30 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 N 1.33362 * 125.45453 * 239.69332 * 5 2 1 7 7 C 1.30818 * 109.86949 * 179.85453 * 6 5 2 8 8 N 1.35309 * 107.96410 * 0.40336 * 7 6 5 9 9 C 1.37423 * 126.87846 * 179.77624 * 8 7 6 10 10 H 1.07995 * 120.00655 * 179.97438 * 9 8 7 11 11 C 1.39002 * 119.99761 * 359.97438 * 9 8 7 12 12 N 1.31267 * 120.00157 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00032 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47059 * 89.99917 * 13 11 9 15 15 H 1.48499 * 109.47267 * 210.00142 * 13 11 9 16 16 H 1.48503 * 109.47017 * 330.00287 * 13 11 9 17 17 N 1.30829 * 125.45059 * 60.00182 * 5 2 1 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 22 22 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 24 24 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 25 25 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 26 26 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 27 27 H 1.08000 * 126.01723 * 180.14119 * 7 6 5 28 28 H 0.97004 * 120.00530 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 7 2.8070 -1.7960 -1.2349 7 6 3.0573 -2.1586 -2.4667 8 7 2.4385 -1.2840 -3.2931 9 6 2.4489 -1.2992 -4.6672 10 1 1.9127 -0.5419 -5.2198 11 6 3.1498 -2.2892 -5.3460 12 7 3.8012 -3.2100 -4.6745 13 14 3.1646 -2.3095 -7.2139 14 1 4.3114 -1.5061 -7.7085 15 1 3.2974 -3.7089 -7.6927 16 1 1.8967 -1.7295 -7.7252 17 7 1.7829 -0.3577 -2.4654 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.6768 1.9562 0.8900 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 -1.7489 1.2492 25 1 3.1300 -0.7217 1.2490 26 1 1.6767 -0.2075 2.1393 27 1 3.6562 -3.0044 -2.7704 28 1 4.2906 -3.9008 -5.1481 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065796.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:05 Heat of formation + Delta-G solvation = 61.603852 kcal Electronic energy + Delta-G solvation = -12291.340107 eV Core-core repulsion = 10150.433190 eV Total energy + Delta-G solvation = -2140.906917 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.30126 -36.17998 -33.88071 -30.74423 -29.04389 -26.72481 -26.60928 -25.43522 -21.49750 -20.68775 -18.16883 -17.56033 -15.30333 -14.71884 -14.15893 -13.98576 -13.56237 -13.14748 -12.76909 -11.92277 -11.80756 -11.59347 -11.48661 -11.36645 -11.10864 -10.72849 -10.44837 -10.38762 -10.31678 -9.97832 -9.75143 -8.44986 -8.33367 -7.86822 -6.89263 -4.55923 2.86556 2.96653 3.03627 3.46841 3.68167 4.46752 4.65775 4.84830 5.34741 5.47457 5.64422 5.91901 6.08830 6.09430 6.33818 6.33924 6.43776 6.46826 6.57560 6.69798 6.89292 6.91588 7.02704 7.27010 7.72643 8.20723 8.37457 8.57700 9.29751 9.97816 10.13788 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.074519 B = 0.009485 C = 0.008926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.653669 B = 2951.459333 C = 3136.057034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.038 3.962 3 C -0.132 4.132 4 C -0.122 4.122 5 C 0.167 3.833 6 N -0.584 5.584 7 C 0.170 3.830 8 N -0.187 5.187 9 C -0.287 4.287 10 H 0.114 0.886 11 C 0.033 3.967 12 N -0.848 5.848 13 Si 0.962 3.038 14 H -0.269 1.269 15 H -0.274 1.274 16 H -0.263 1.263 17 N -0.384 5.384 18 H 0.058 0.942 19 H 0.052 0.948 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.231 0.769 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.939 2.715 3.044 4.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.036 3.964 3 C -0.190 4.190 4 C -0.180 4.180 5 C -0.112 4.112 6 N -0.317 5.317 7 C -0.118 4.118 8 N 0.040 4.960 9 C -0.421 4.421 10 H 0.132 0.868 11 C -0.176 4.176 12 N -0.482 5.482 13 Si 0.786 3.214 14 H -0.194 1.194 15 H -0.199 1.199 16 H -0.187 1.187 17 N -0.223 5.223 18 H 0.077 0.923 19 H 0.071 0.929 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.247 0.753 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.079 2.915 3.014 4.680 hybrid contribution 0.256 -0.350 -1.155 1.234 sum -1.822 2.565 1.859 3.654 Atomic orbital electron populations 1.21804 0.94371 1.01605 1.01230 1.18552 0.94551 0.93568 0.89776 1.21803 1.00936 0.95044 1.01229 1.21618 1.01534 1.00123 0.94700 1.23319 0.99940 0.95428 0.92520 1.70204 1.22544 1.16216 1.22713 1.26967 1.01819 0.99509 0.83480 1.46300 1.28064 1.15564 1.06088 1.19960 1.31220 1.13360 0.77550 0.86810 1.25657 0.94697 0.94283 1.02975 1.69450 1.28078 1.13438 1.37254 0.85362 0.79543 0.78293 0.78251 1.19435 1.19925 1.18695 1.77734 1.25675 1.17478 1.01399 0.92292 0.92901 0.92992 0.92908 0.92997 0.92289 0.92369 0.92356 0.93590 0.75330 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.46 37.16 0.31 -1.98 15 2 C 0.04 0.75 0.99 -155.66 -0.15 0.59 15 3 C -0.13 -2.29 8.46 37.15 0.31 -1.98 15 4 C -0.12 -2.13 7.94 37.16 0.29 -1.83 15 5 C 0.17 4.21 6.34 -156.64 -0.99 3.21 15 6 N -0.58 -15.68 10.46 -11.72 -0.12 -15.80 15 7 C 0.17 4.77 11.56 -89.87 -1.04 3.73 15 8 N -0.19 -5.34 3.74 -12.75 -0.05 -5.39 15 9 C -0.29 -7.77 10.60 -14.76 -0.16 -7.92 15 10 H 0.11 2.94 7.83 -52.49 -0.41 2.53 15 11 C 0.03 0.81 5.48 -17.51 -0.10 0.72 15 12 N -0.85 -21.40 10.21 55.50 0.57 -20.84 15 13 Si 0.96 18.66 29.55 -169.99 -5.02 13.63 15 14 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 15 H -0.27 -5.18 7.11 56.52 0.40 -4.77 15 16 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 17 N -0.38 -10.51 12.64 32.46 0.41 -10.10 15 18 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 19 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 27 H 0.23 6.33 5.54 -52.49 -0.29 6.04 15 28 H 0.29 6.52 8.31 -40.82 -0.34 6.18 15 LS Contribution 242.69 15.07 3.66 3.66 Total: -1.00 -29.51 242.69 -5.72 -35.22 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.64 Total: 5.08 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.52 Total: -5.46 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.81 Total: -52.13 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.51 -5.72 -35.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065796.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.828 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds