Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 N 1.40017 * 126.14561 * 59.68616 * 4 2 1 6 6 C 1.31695 * 109.06191 * 179.84744 * 5 4 2 7 7 N 1.39891 * 125.54262 * 180.18617 * 6 5 4 8 8 C 1.39255 * 108.91905 * 0.42208 * 6 5 4 9 9 C 1.37524 * 126.14120 * 239.99823 * 4 2 1 10 10 C 1.40228 * 126.59981 * 0.02562 * 9 4 2 11 11 H 1.08004 * 119.99854 * 359.97438 * 10 9 4 12 12 C 1.40141 * 120.00336 * 179.97438 * 10 9 4 13 13 N 1.30777 * 119.99671 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00113 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47324 * 90.00020 * 14 12 10 16 16 H 1.48503 * 109.47059 * 210.00420 * 14 12 10 17 17 H 1.48500 * 109.47014 * 330.00015 * 14 12 10 18 18 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 20 20 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 21 21 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 22 22 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 23 23 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 24 24 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 25 25 H 0.97006 * 120.00237 * 180.26633 * 7 6 5 26 26 H 0.97003 * 120.00008 * 0.27368 * 7 6 5 27 27 H 1.07994 * 126.24768 * 179.72061 * 8 6 5 28 28 H 0.96993 * 119.99556 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 7 1.7555 -0.3295 -2.5233 6 6 2.3618 -1.1777 -3.3279 7 7 2.3321 -1.1354 -4.7258 8 6 3.0330 -2.1266 -2.5609 9 6 2.8122 -1.8133 -1.2174 10 6 3.3044 -2.5103 -0.1046 11 1 3.0656 -2.1725 0.8930 12 6 4.1063 -3.6451 -0.2871 13 7 4.3958 -4.0537 -1.4951 14 14 4.7614 -4.5739 1.1953 15 1 3.7915 -5.6279 1.5873 16 1 6.0623 -5.2017 0.8508 17 1 4.9511 -3.6305 2.3263 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 1.8934 -0.5139 0.8900 22 1 1.6768 1.9562 0.8901 23 1 3.1301 1.4425 0.0005 24 1 1.6768 1.9563 -0.8899 25 1 2.8067 -1.8061 -5.2416 26 1 1.8370 -0.4354 -5.1795 27 1 3.6173 -2.9536 -2.9361 28 1 4.9511 -4.8389 -1.6213 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261071746.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = 58.184030 kcal Electronic energy + Delta-G solvation = -12337.128387 eV Core-core repulsion = 10196.073176 eV Total energy + Delta-G solvation = -2141.055212 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.81212 -34.75319 -33.71278 -32.13342 -28.71560 -26.96587 -26.58344 -25.02410 -21.05974 -19.68712 -18.12941 -16.92492 -15.82951 -14.94821 -14.10675 -13.91857 -13.48309 -13.47324 -12.30796 -12.01015 -11.94554 -11.59340 -11.51207 -11.25988 -11.16823 -10.69152 -10.45360 -10.22175 -9.71996 -9.65880 -8.95679 -8.41013 -7.01666 -6.54652 -6.15884 -4.38981 2.98491 3.09811 3.13357 3.82115 3.91297 4.16126 4.79015 5.20804 5.45444 5.53617 5.83826 5.90803 6.09923 6.23267 6.40267 6.41388 6.74289 6.86052 7.09491 7.29144 7.59806 7.73591 8.04157 8.40608 8.54280 8.76092 9.07286 9.19096 9.38576 9.97742 10.33832 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.030729 B = 0.014512 C = 0.010547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.974777 B = 1928.964280 C = 2654.175164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.181 3.819 3 C -0.153 4.153 4 N -0.426 5.426 5 N -0.432 5.432 6 C 0.322 3.678 7 N -0.864 5.864 8 C -0.394 4.394 9 C 0.269 3.731 10 C -0.452 4.452 11 H 0.073 0.927 12 C 0.077 3.923 13 N -0.787 5.787 14 Si 0.921 3.079 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.264 1.264 18 H 0.053 0.947 19 H 0.053 0.947 20 H 0.060 0.940 21 H 0.087 0.913 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.396 0.604 26 H 0.382 0.618 27 H 0.156 0.844 28 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 2.505 2.106 3.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.076 3.924 3 C -0.211 4.211 4 N -0.217 5.217 5 N -0.265 5.265 6 C 0.068 3.932 7 N -0.415 5.415 8 C -0.426 4.426 9 C 0.150 3.850 10 C -0.489 4.489 11 H 0.091 0.909 12 C -0.142 4.142 13 N -0.414 5.414 14 Si 0.746 3.254 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.188 1.188 18 H 0.072 0.928 19 H 0.072 0.928 20 H 0.079 0.921 21 H 0.105 0.895 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.224 0.776 26 H 0.208 0.792 27 H 0.173 0.827 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.392 3.396 2.246 4.722 hybrid contribution 0.830 -1.184 0.216 1.462 sum -1.562 2.212 2.462 3.660 Atomic orbital electron populations 1.22082 0.95955 1.01843 1.01266 1.20551 0.93382 0.92369 0.86074 1.22082 1.01321 0.96480 1.01260 1.48069 1.46326 1.25004 1.02266 1.76750 1.34794 1.27994 0.86945 1.19114 0.95238 0.94551 0.84313 1.41130 1.62737 1.35819 1.01767 1.21672 1.21145 1.09190 0.90578 1.18587 0.87601 0.84153 0.94616 1.18597 1.28472 1.09337 0.92474 0.90858 1.25727 0.94712 0.96723 0.97011 1.69763 1.28684 1.21056 1.21890 0.86114 0.78492 0.79635 0.81195 1.19540 1.20211 1.18777 0.92785 0.92786 0.92079 0.89549 0.92780 0.92783 0.92090 0.77629 0.79182 0.82709 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.45 37.16 0.35 -2.44 15 2 C 0.18 3.76 3.67 -67.93 -0.25 3.51 15 3 C -0.15 -2.79 9.46 37.16 0.35 -2.44 15 4 N -0.43 -10.96 3.35 -52.16 -0.17 -11.13 15 5 N -0.43 -11.36 12.42 31.22 0.39 -10.97 15 6 C 0.32 8.38 8.36 -154.70 -1.29 7.09 15 7 N -0.86 -17.64 9.15 31.21 0.29 -17.36 15 8 C -0.39 -11.14 9.78 -38.66 -0.38 -11.52 15 9 C 0.27 7.58 6.75 -84.02 -0.57 7.01 15 10 C -0.45 -12.19 9.04 -38.12 -0.34 -12.53 15 11 H 0.07 1.85 6.74 -52.48 -0.35 1.49 15 12 C 0.08 1.96 5.50 -17.29 -0.10 1.87 15 13 N -0.79 -20.69 10.29 55.56 0.57 -20.12 15 14 Si 0.92 18.85 29.56 -169.99 -5.03 13.82 15 15 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 16 H -0.28 -5.54 7.11 56.52 0.40 -5.14 15 17 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 18 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 19 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 20 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 21 H 0.09 1.76 6.71 -51.93 -0.35 1.41 15 22 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.40 7.15 8.96 -40.82 -0.37 6.78 15 26 H 0.38 6.87 8.96 -40.82 -0.37 6.51 15 27 H 0.16 4.50 5.72 -52.49 -0.30 4.20 15 28 H 0.28 6.56 8.29 -40.82 -0.34 6.22 15 LS Contribution 242.33 15.07 3.65 3.65 Total: -1.00 -30.66 242.33 -5.93 -36.59 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -3.40 Total: 14.97 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.22 Total: -9.45 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 1.07 Total: -59.58 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.66 -5.93 -36.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071746.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.777 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds