Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 N 1.40017 * 126.14561 * 59.68616 * 4 2 1 6 6 C 1.31695 * 109.06191 * 179.84744 * 5 4 2 7 7 N 1.39891 * 125.54262 * 180.18617 * 6 5 4 8 8 C 1.39255 * 108.91905 * 0.42208 * 6 5 4 9 9 C 1.37524 * 126.14120 * 239.99823 * 4 2 1 10 10 C 1.40228 * 126.59981 * 0.02562 * 9 4 2 11 11 H 1.08004 * 119.99854 * 359.97438 * 10 9 4 12 12 C 1.40141 * 120.00336 * 179.97438 * 10 9 4 13 13 N 1.30777 * 119.99671 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00113 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47324 * 90.00020 * 14 12 10 16 16 H 1.48503 * 109.47059 * 210.00420 * 14 12 10 17 17 H 1.48500 * 109.47014 * 330.00015 * 14 12 10 18 18 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 20 20 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 21 21 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 22 22 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 23 23 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 24 24 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 25 25 H 0.97006 * 120.00237 * 180.26633 * 7 6 5 26 26 H 0.97003 * 120.00008 * 0.27368 * 7 6 5 27 27 H 1.07994 * 126.24768 * 179.72061 * 8 6 5 28 28 H 0.96993 * 119.99556 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 7 1.7555 -0.3295 -2.5233 6 6 2.3618 -1.1777 -3.3279 7 7 2.3321 -1.1354 -4.7258 8 6 3.0330 -2.1266 -2.5609 9 6 2.8122 -1.8133 -1.2174 10 6 3.3044 -2.5103 -0.1046 11 1 3.0656 -2.1725 0.8930 12 6 4.1063 -3.6451 -0.2871 13 7 4.3958 -4.0537 -1.4951 14 14 4.7614 -4.5739 1.1953 15 1 3.7915 -5.6279 1.5873 16 1 6.0623 -5.2017 0.8508 17 1 4.9511 -3.6305 2.3263 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 1.8934 -0.5139 0.8900 22 1 1.6768 1.9562 0.8901 23 1 3.1301 1.4425 0.0005 24 1 1.6768 1.9563 -0.8899 25 1 2.8067 -1.8061 -5.2416 26 1 1.8370 -0.4354 -5.1795 27 1 3.6173 -2.9536 -2.9361 28 1 4.9511 -4.8389 -1.6213 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261071746.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = 37.566152 kcal Electronic energy + Delta-G solvation = -12338.022445 eV Core-core repulsion = 10196.073176 eV Total energy + Delta-G solvation = -2141.949270 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75928 -36.44753 -35.65208 -33.89102 -30.70840 -28.83429 -28.04177 -27.04342 -22.80278 -21.65910 -19.99205 -18.83232 -17.68904 -16.74491 -15.80983 -15.62274 -15.26904 -15.16126 -14.12731 -13.78043 -13.69226 -13.37813 -13.01517 -12.91158 -12.85965 -12.26278 -12.08852 -11.88000 -11.64735 -11.47212 -10.77325 -10.43745 -9.03808 -8.46700 -8.07988 -6.44422 1.32836 1.43160 1.58027 1.91870 2.18804 2.39116 2.77915 3.44004 3.50087 3.97119 4.26438 4.35063 4.73603 4.76794 4.92131 4.92251 5.10686 5.17000 5.37288 5.45336 5.59941 5.84420 6.07678 6.42068 6.59230 6.83122 7.20367 7.28808 7.41723 8.02661 8.44347 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.030729 B = 0.014512 C = 0.010547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.974777 B = 1928.964280 C = 2654.175164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.162 3.838 3 C -0.142 4.142 4 N -0.432 5.432 5 N -0.443 5.443 6 C 0.314 3.686 7 N -0.846 5.846 8 C -0.432 4.432 9 C 0.242 3.758 10 C -0.480 4.480 11 H 0.083 0.917 12 C 0.032 3.968 13 N -0.816 5.816 14 Si 1.001 2.999 15 H -0.263 1.263 16 H -0.268 1.268 17 H -0.255 1.255 18 H 0.037 0.963 19 H 0.097 0.903 20 H 0.048 0.952 21 H 0.088 0.912 22 H 0.097 0.903 23 H 0.037 0.963 24 H 0.048 0.952 25 H 0.407 0.593 26 H 0.397 0.603 27 H 0.140 0.860 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 2.683 3.599 4.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.059 3.941 3 C -0.200 4.200 4 N -0.222 5.222 5 N -0.277 5.277 6 C 0.058 3.942 7 N -0.399 5.399 8 C -0.464 4.464 9 C 0.122 3.878 10 C -0.516 4.516 11 H 0.101 0.899 12 C -0.185 4.185 13 N -0.443 5.443 14 Si 0.821 3.179 15 H -0.187 1.187 16 H -0.193 1.193 17 H -0.179 1.179 18 H 0.056 0.944 19 H 0.116 0.884 20 H 0.068 0.932 21 H 0.106 0.894 22 H 0.116 0.884 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.237 0.763 26 H 0.225 0.775 27 H 0.158 0.842 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.531 3.605 3.706 5.757 hybrid contribution 0.856 -1.227 -0.286 1.524 sum -1.675 2.378 3.420 4.490 Atomic orbital electron populations 1.21986 0.93855 1.01293 1.02819 1.21035 0.95154 0.93433 0.84440 1.21986 1.00220 0.94930 1.02816 1.48444 1.45983 1.24739 1.03082 1.76647 1.35113 1.28296 0.87610 1.19364 0.94700 0.93889 0.86239 1.41022 1.62571 1.36474 0.99815 1.21718 1.22889 1.10129 0.91680 1.19015 0.88316 0.85274 0.95156 1.18985 1.29540 1.10403 0.92630 0.89900 1.26811 0.94233 0.97057 1.00357 1.69853 1.28706 1.21550 1.24183 0.84921 0.77957 0.78069 0.76957 1.18724 1.19273 1.17853 0.94367 0.88392 0.93238 0.89353 0.88389 0.94369 0.93240 0.76326 0.77530 0.84230 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.45 71.98 0.68 -4.23 15 2 C 0.16 6.58 3.67 44.99 0.17 6.74 15 3 C -0.14 -4.91 9.46 71.98 0.68 -4.23 15 4 N -0.43 -22.37 3.35 -318.94 -1.07 -23.44 15 5 N -0.44 -23.47 12.42 -55.13 -0.68 -24.15 15 6 C 0.31 16.54 8.36 133.00 1.11 17.65 15 7 N -0.85 -34.31 9.15 -55.17 -0.50 -34.82 15 8 C -0.43 -25.13 9.78 22.87 0.22 -24.91 15 9 C 0.24 13.91 6.75 39.09 0.26 14.17 15 10 C -0.48 -26.06 9.04 23.22 0.21 -25.85 15 11 H 0.08 4.17 6.74 -2.91 -0.02 4.15 15 12 C 0.03 1.60 5.50 85.31 0.47 2.07 15 13 N -0.82 -43.44 10.29 21.86 0.23 -43.22 15 14 Si 1.00 37.86 29.56 68.60 2.03 39.89 15 15 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15 16 H -0.27 -9.68 7.11 99.48 0.71 -8.97 15 17 H -0.25 -9.21 7.11 99.48 0.71 -8.51 15 18 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 19 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 20 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 21 H 0.09 3.51 6.71 -2.39 -0.02 3.49 15 22 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.41 14.59 8.96 -92.70 -0.83 13.76 15 26 H 0.40 13.89 8.96 -92.71 -0.83 13.06 15 27 H 0.14 8.43 5.72 -2.91 -0.02 8.41 15 28 H 0.28 13.59 8.29 -92.71 -0.77 12.83 15 Total: -1.00 -66.92 242.33 3.32 -63.60 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.48 Total: 40.71 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 3.80 Total: -18.57 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -2.03 Total: -125.63 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -66.92 3.32 -63.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071746.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.163 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds