Wall clock time and date at job start Mon Mar 30 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99854 * 2 1 4 4 C 1.53002 * 109.46932 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47064 * 299.99521 * 3 2 1 6 6 H 1.07999 * 119.99351 * 120.00103 * 5 3 2 7 7 C 1.37874 * 120.00336 * 300.00691 * 5 3 2 8 8 N 1.31518 * 119.99840 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00352 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47154 * 89.99748 * 9 7 5 11 11 H 1.48496 * 109.47607 * 209.99684 * 9 7 5 12 12 H 1.48505 * 109.47104 * 329.99881 * 9 7 5 13 13 C 1.50695 * 109.47161 * 59.99937 * 3 2 1 14 14 C 1.39870 * 126.03480 * 209.68644 * 13 3 2 15 15 N 1.30839 * 108.20307 * 180.26430 * 14 13 3 16 16 N 1.40087 * 108.20037 * 0.02562 * 15 14 13 17 17 H 0.97006 * 126.03479 * 179.97438 * 16 15 14 18 18 C 1.34939 * 107.93005 * 0.02562 * 16 15 14 19 19 H 1.08996 * 109.47095 * 300.00362 * 1 2 3 20 20 H 1.09000 * 109.46698 * 60.00234 * 1 2 3 21 21 H 1.09003 * 109.47140 * 180.02562 * 1 2 3 22 22 H 1.00905 * 110.99869 * 123.94891 * 2 1 3 23 23 H 1.09004 * 109.46725 * 299.99759 * 4 3 2 24 24 H 1.08998 * 109.47455 * 59.99413 * 4 3 2 25 25 H 1.08996 * 109.47022 * 179.97438 * 4 3 2 26 26 H 0.96998 * 119.99947 * 180.02562 * 8 7 5 27 27 H 1.08001 * 125.90246 * 0.26835 * 14 13 3 28 28 H 1.07999 * 126.13245 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5249 1.3306 -0.0006 5 6 1.5123 2.0950 -1.2306 6 1 0.9151 2.9893 -1.1314 7 6 1.8327 1.6152 -2.4828 8 7 2.5603 0.5263 -2.6034 9 14 1.2332 2.5115 -4.0080 10 1 2.2384 3.5271 -4.4125 11 1 1.0424 1.5370 -5.1121 12 1 -0.0577 3.1833 -3.7121 13 6 1.5123 2.0950 1.2304 14 6 1.2804 3.4701 1.3385 15 7 0.8751 3.7217 2.5568 16 7 0.8368 2.5129 3.2637 17 1 0.5728 2.4019 4.1905 18 6 1.2331 1.5303 2.4280 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8306 -0.5261 0.7815 23 1 3.8748 0.8072 0.8892 24 1 3.8741 0.8074 -0.8908 25 1 3.9155 2.3482 -0.0011 26 1 2.7860 0.1889 -3.4844 27 1 1.4129 4.1984 0.5521 28 1 1.3118 0.4809 2.6709 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107949.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:35 Heat of formation + Delta-G solvation = 64.925541 kcal Electronic energy + Delta-G solvation = -12706.770852 eV Core-core repulsion = 10566.007974 eV Total energy + Delta-G solvation = -2140.762878 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.00404 -37.80526 -33.86312 -32.42574 -31.28877 -29.42706 -27.17348 -25.12322 -23.17344 -22.31409 -20.25222 -18.89600 -17.61064 -16.40521 -15.88863 -15.36089 -15.13968 -14.90615 -14.64273 -13.75788 -13.50302 -13.16896 -12.72249 -12.61689 -12.52899 -12.21850 -11.88249 -11.70247 -11.39344 -10.82151 -10.38064 -10.30320 -9.09461 -8.55935 -7.77428 -5.95240 1.09531 1.47545 1.51455 1.57403 2.09259 2.22460 2.57701 3.41015 4.02433 4.17792 4.27158 4.79820 4.86774 4.96005 5.08144 5.18070 5.20702 5.36594 5.42934 5.61586 5.83861 5.88942 6.18568 6.50198 6.61320 6.76344 6.97975 7.11051 7.47907 7.73271 9.20423 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.043646 B = 0.013816 C = 0.012573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.376516 B = 2026.205085 C = 2226.388139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.662 5.662 3 C 0.303 3.697 4 C -0.112 4.112 5 C -0.520 4.520 6 H 0.043 0.957 7 C 0.044 3.956 8 N -0.869 5.869 9 Si 0.927 3.073 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.278 1.278 13 C -0.238 4.238 14 C 0.050 3.950 15 N -0.331 5.331 16 N -0.472 5.472 17 H 0.448 0.552 18 C 0.045 3.955 19 H 0.008 0.992 20 H 0.035 0.965 21 H 0.052 0.948 22 H 0.311 0.689 23 H 0.023 0.977 24 H 0.065 0.935 25 H 0.023 0.977 26 H 0.250 0.750 27 H 0.174 0.826 28 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 -0.402 8.462 8.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.290 5.290 3 C 0.213 3.787 4 C -0.170 4.170 5 C -0.559 4.559 6 H 0.061 0.939 7 C -0.159 4.159 8 N -0.505 5.505 9 Si 0.755 3.245 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.251 4.251 14 C -0.136 4.136 15 N -0.155 5.155 16 N -0.183 5.183 17 H 0.294 0.706 18 C -0.103 4.103 19 H 0.026 0.974 20 H 0.054 0.946 21 H 0.071 0.929 22 H 0.127 0.873 23 H 0.042 0.958 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.191 0.809 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.335 0.283 8.429 8.751 hybrid contribution -0.364 0.104 -0.363 0.525 sum -2.699 0.387 8.067 8.515 Atomic orbital electron populations 1.21749 0.89674 0.98775 0.98781 1.60654 1.06241 1.15503 1.46640 1.16879 0.90837 0.83770 0.87262 1.21591 0.97064 0.98437 0.99942 1.21079 1.33759 1.10123 0.90941 0.93876 1.25393 0.95124 0.95071 1.00295 1.70123 1.36788 1.21399 1.22212 0.86084 0.78615 0.78617 0.81229 1.20630 1.21655 1.20358 1.21602 1.10787 0.94544 0.98140 1.23831 0.98379 0.97246 0.94133 1.77113 1.25938 1.05682 1.06782 1.46135 1.54582 1.04162 1.13427 0.70593 1.22476 1.01299 0.95896 0.90580 0.97379 0.94563 0.92926 0.87276 0.95768 0.91647 0.95830 0.94065 0.80937 0.79113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.45 10.00 127.69 1.28 3.73 15 2 N -0.66 -28.83 5.60 -500.52 -2.80 -31.63 15 3 C 0.30 13.88 0.53 2.03 0.00 13.88 15 4 C -0.11 -5.18 8.49 71.98 0.61 -4.57 15 5 C -0.52 -27.04 6.39 25.60 0.16 -26.87 15 6 H 0.04 2.28 6.58 -2.91 -0.02 2.26 15 7 C 0.04 2.36 5.23 84.65 0.44 2.80 15 8 N -0.87 -47.89 10.80 21.45 0.23 -47.66 15 9 Si 0.93 43.04 29.54 68.60 2.03 45.07 15 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 15 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 13 C -0.24 -9.54 3.95 -20.15 -0.08 -9.62 15 14 C 0.05 2.01 10.91 85.24 0.93 2.94 15 15 N -0.33 -12.20 12.70 -57.02 -0.72 -12.92 15 16 N -0.47 -13.90 7.36 -57.60 -0.42 -14.32 15 17 H 0.45 9.22 8.96 -213.32 -1.91 7.31 15 18 C 0.04 1.43 9.88 83.54 0.83 2.25 15 19 H 0.01 0.30 6.11 -2.39 -0.01 0.29 15 20 H 0.04 1.70 7.09 -2.39 -0.02 1.68 15 21 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.31 11.78 7.98 -89.69 -0.72 11.06 15 23 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 24 H 0.06 3.39 6.07 -2.39 -0.01 3.38 15 25 H 0.02 1.06 8.14 -2.39 -0.02 1.05 15 26 H 0.25 13.44 8.31 -92.71 -0.77 12.67 15 27 H 0.17 6.99 7.46 -2.91 -0.02 6.97 15 28 H 0.19 4.83 7.51 -2.91 -0.02 4.80 15 Total: -1.00 -60.74 233.19 1.04 -59.71 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -1.44 Total: 17.22 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 4.17 Total: -15.46 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -3.72 Total: -106.54 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -60.74 1.04 -59.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107949.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.632 kcal (2) G-P(sol) polarization free energy of solvation -60.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds