Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46891 * 110.99923 * 2 1 4 4 H 1.09001 * 109.47053 * 39.81296 * 3 2 1 5 5 C 1.50706 * 109.47281 * 159.81033 * 3 2 1 6 6 H 1.07994 * 119.99950 * 116.54452 * 5 3 2 7 7 C 1.37879 * 119.99803 * 296.54785 * 5 3 2 8 8 N 1.31517 * 119.99801 * 171.68913 * 7 5 3 9 9 Si 1.86794 * 120.00082 * 351.69081 * 7 5 3 10 10 H 1.48500 * 109.47578 * 273.40018 * 9 7 5 11 11 H 1.48505 * 109.47461 * 33.40067 * 9 7 5 12 12 H 1.48500 * 109.47051 * 153.40219 * 9 7 5 13 13 C 1.50693 * 109.47356 * 279.81203 * 3 2 1 14 14 C 1.35317 * 126.12655 * 325.79343 * 13 3 2 15 15 C 1.39871 * 107.92277 * 179.97438 * 14 13 3 16 16 N 1.30839 * 108.20144 * 359.97438 * 15 14 13 17 17 N 1.34947 * 126.13018 * 145.48216 * 13 3 2 18 18 C 1.46504 * 126.03521 * 0.03744 * 17 13 3 19 19 H 1.09000 * 109.47148 * 186.57252 * 1 2 3 20 20 H 1.08996 * 109.47767 * 306.57863 * 1 2 3 21 21 H 1.09000 * 109.46737 * 66.57925 * 1 2 3 22 22 H 1.00898 * 111.00096 * 236.04486 * 2 1 3 23 23 H 0.97000 * 119.99813 * 180.02562 * 8 7 5 24 24 H 1.08001 * 126.03896 * 359.93574 * 14 13 3 25 25 H 1.08001 * 125.90153 * 179.97438 * 15 14 13 26 26 H 1.09000 * 109.47394 * 90.00144 * 18 17 13 27 27 H 1.09004 * 109.47017 * 209.99838 * 18 17 13 28 28 H 1.09002 * 109.46914 * 329.99472 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 1 1.3886 1.9934 0.6580 5 6 3.4204 1.3625 0.4904 6 1 4.2197 1.6706 -0.1673 7 6 3.7037 0.9610 1.7786 8 7 4.9526 0.7961 2.1564 9 14 2.3136 0.6512 2.9873 10 1 1.9438 1.9256 3.6538 11 1 1.1359 0.1131 2.2601 12 1 2.7558 -0.3315 4.0091 13 6 1.9494 1.9271 -1.3999 14 6 2.1370 1.2272 -2.5427 15 6 2.0111 2.1146 -3.6166 16 7 1.7565 3.3045 -3.1358 17 7 1.7080 3.2108 -1.7389 18 6 1.4446 4.3126 -0.8098 19 1 -0.3633 -1.0209 0.1176 20 1 -0.3634 0.6124 0.8252 21 1 -0.3633 0.4085 -0.9430 22 1 1.8306 -0.5261 -0.7813 23 1 5.1518 0.5132 3.0626 24 1 2.3474 0.1702 -2.6132 25 1 2.1074 1.8613 -4.6620 26 1 2.3859 4.7874 -0.5331 27 1 0.7955 5.0451 -1.2896 28 1 0.9564 3.9250 0.0843 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110255.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = 87.179687 kcal Electronic energy + Delta-G solvation = -12515.463311 eV Core-core repulsion = 10375.665445 eV Total energy + Delta-G solvation = -2139.797866 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.58690 -35.81603 -32.68839 -32.25144 -29.82663 -27.33606 -26.17054 -23.88604 -22.22777 -20.37275 -18.81618 -17.25149 -16.27004 -14.83800 -14.43102 -14.19326 -13.79245 -13.56917 -12.95156 -12.80576 -12.57497 -12.17105 -11.88125 -11.32347 -11.18593 -10.66580 -10.55714 -10.15440 -9.94808 -9.36702 -8.62555 -8.51993 -7.79586 -7.49937 -6.10742 -4.19169 2.58470 3.15243 3.36610 3.47397 3.49146 3.65640 4.54122 4.99441 5.11044 5.49022 5.52612 5.64996 5.66024 5.86389 5.90208 6.08205 6.12314 6.36097 6.42480 6.44785 6.84383 7.27210 7.44362 7.65773 8.01399 8.16440 8.37224 8.49045 8.91576 9.52531 10.99208 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.039609 B = 0.013838 C = 0.012892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.744626 B = 2022.866702 C = 2171.385442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.669 5.669 3 C 0.243 3.757 4 H 0.043 0.957 5 C -0.515 4.515 6 H 0.072 0.928 7 C 0.095 3.905 8 N -0.890 5.890 9 Si 0.877 3.123 10 H -0.292 1.292 11 H -0.226 1.226 12 H -0.295 1.295 13 C 0.114 3.886 14 C -0.296 4.296 15 C 0.042 3.958 16 N -0.326 5.326 17 N -0.374 5.374 18 C 0.106 3.894 19 H 0.055 0.945 20 H 0.053 0.947 21 H 0.010 0.990 22 H 0.336 0.664 23 H 0.265 0.735 24 H 0.139 0.861 25 H 0.174 0.826 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.603 1.624 -4.492 9.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.301 5.301 3 C 0.134 3.866 4 H 0.060 0.940 5 C -0.554 4.554 6 H 0.090 0.910 7 C -0.111 4.111 8 N -0.526 5.526 9 Si 0.703 3.297 10 H -0.219 1.219 11 H -0.148 1.148 12 H -0.221 1.221 13 C -0.016 4.016 14 C -0.325 4.325 15 C -0.143 4.143 16 N -0.147 5.147 17 N -0.156 5.156 18 C -0.036 4.036 19 H 0.074 0.926 20 H 0.072 0.928 21 H 0.028 0.972 22 H 0.155 0.845 23 H 0.075 0.925 24 H 0.157 0.843 25 H 0.191 0.809 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.711 2.837 -3.860 9.941 hybrid contribution -0.446 -0.748 -0.054 0.873 sum -9.157 2.088 -3.914 10.175 Atomic orbital electron populations 1.22221 0.91107 1.00699 0.98771 1.61557 1.04684 1.15032 1.48806 1.18439 0.97817 0.85728 0.84632 0.93981 1.20596 0.89324 1.46932 0.98511 0.90979 1.24882 0.95521 0.92444 0.98234 1.69952 1.18691 1.45021 1.18921 0.86887 0.85411 0.77530 0.79841 1.21876 1.14816 1.22107 1.22685 0.94983 0.84313 0.99650 1.21018 1.19444 1.01131 0.90919 1.23621 1.00255 0.90778 0.99664 1.77152 1.26777 1.22566 0.88253 1.48372 1.55366 1.07392 1.04477 1.21722 1.02401 0.88096 0.91330 0.92644 0.92781 0.97171 0.84499 0.92508 0.84336 0.80945 0.90702 0.90341 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.75 60.07 0.59 0.97 15 2 N -0.67 -13.88 4.59 -116.50 -0.53 -14.42 15 3 C 0.24 5.48 1.58 -70.02 -0.11 5.37 15 4 H 0.04 0.94 5.59 -51.93 -0.29 0.65 15 5 C -0.52 -13.99 9.26 -34.44 -0.32 -14.31 15 6 H 0.07 2.21 7.98 -52.49 -0.42 1.79 15 7 C 0.09 2.64 5.46 -17.82 -0.10 2.54 15 8 N -0.89 -26.61 13.96 55.43 0.77 -25.84 15 9 Si 0.88 20.90 26.82 -169.99 -4.56 16.34 15 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 15 11 H -0.23 -5.03 4.59 56.52 0.26 -4.77 15 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 15 13 C 0.11 2.42 5.53 -82.27 -0.46 1.96 15 14 C -0.30 -5.82 9.99 -40.01 -0.40 -6.22 15 15 C 0.04 0.77 12.03 -17.36 -0.21 0.56 15 16 N -0.33 -6.49 12.58 30.63 0.39 -6.11 15 17 N -0.37 -7.50 4.01 -63.88 -0.26 -7.75 15 18 C 0.11 1.70 11.27 59.85 0.67 2.38 15 19 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.05 0.94 7.36 -51.93 -0.38 0.56 15 21 H 0.01 0.17 7.96 -51.93 -0.41 -0.25 15 22 H 0.34 6.66 7.17 -39.29 -0.28 6.38 15 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 24 H 0.14 2.51 7.18 -52.49 -0.38 2.14 15 25 H 0.17 2.42 8.06 -52.49 -0.42 2.00 15 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 15 28 H 0.08 1.26 6.98 -51.93 -0.36 0.90 15 LS Contribution 236.64 15.07 3.57 3.57 Total: -1.00 -31.45 236.64 -4.45 -35.90 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.49 Total: 5.07 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.33 Total: -6.75 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.37 Total: -54.11 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.56 Total: 16.34 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.45 -4.45 -35.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110255.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.078 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds